Gene BamMC406_0319 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_0319 
Symbol 
ID6175988 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010551 
Strand
Start bp358686 
End bp360347 
Gene Length1662 bp 
Protein Length553 aa 
Translation table11 
GC content71% 
IMG OID641680064 
Producttype IV pilus secretin PilQ 
Protein accessionYP_001807036 
Protein GI172059384 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG4796] Type II secretory pathway, component HofQ 
TIGRFAM ID[TIGR02515] type IV pilus secretin (or competence protein) PilQ 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.935194 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGAAAT ACGGATGGTG GGCGATCGTA TTCCAGGTCG CGTCATGCGT GGCCACGGCG 
CACGCGGCGC TACCGCCTTT GCCCCCGCTG CCCCCTTTAC CGCCGGCCGG CTGGCCGATC
GCAGCGATGC AGGCGTCTGT CGAGGACACA CCGCTGCCGC AGGGCGCGCT CGATGGCGCG
GACGGCATGA ACGGTGCCGC ATCCGCACAG GGCGGCCCAC AGCCGTTCGA TCAGGCCGCA
CATGCAGCGG TTCGGGCAGG CACGACCGCG CCGGTACCGT TGCTGGAAGG GCCGCCGATC
CCGTTGCCAC CGCCGACGCG CATGAGCGAC GCCGCGGCGC GGCACCCCGG CGATGCGGAC
GACGCGCGGC GGATCTCGCT GAACCTGCAA GGCGCCGGGC TCGCGGCTGC ATTCGATGCG
CTCGCGCGGT TCACCGGGCT CAACATCATC GTCGGCGAAC AGGTGCGCGG CACCGTGACG
TTACGTCTGA ACAATGTCCG CTGGCGCGAT GCGTTCGATA CGTTGCTCGA CACGCACGGG
CTGGCCATGT CGCGGCGCGG CAACGTGATC TGGGTCACGC CGGCGACCGA ACTCGCCGCG
CGCGAGCGCG AGCGCTTCGA AACGCACGCC CGCGCGGCCG ATCTGGAGCC GCTCGCGAGC
CGGACCTTCG CGCTGCATTA CCCGCGCGCG CTGGACGTGC AGCGGCTGCT GGCCGGTGCG
ACCGGACAGC GCCTGCTGTC GAAACGCGGC GCCGCGGCGG CCGATCCGCG CACGAACCTG
CTGTTCGTCA CAGATCTTGC GCCGCGCATC GTGCAGATCG CGGGGCTGAT CGACGCGATC
GATCGGCCGT CGCGACAGGT GCGGATCGAG GCGCGCATCG TCGAAGGCGA ACAGGGCTTT
TCGCGCAACC TCGGCGCTCG CATCGCGTTG CGCGCGCAGG GACGGGCGCC CACGGCCGAC
GGCGCGGCAT CCGCGACCGA CACGCGCAAC GCGCTCGATC TCGCCGCGCG GCCGCTCGGC
GGCTTCGAGG CGGCGACGGC CGGCTTCACG TTGTTCGCCG CGCCGCTCAG CCGCGTGCTC
GACGTCGAGC TGAGCGCGCT CGAGGCACAG GGCCGGGGCC AGATCGTGTC CAGCCCGCGC
GTGGTCACGG CCGACCGCGT GAAGGCGATC GTCGAACAGG GCTCGGAGCT GCCGTATCAG
GCGAAGGTCG GCAATGGCGT GAGTGGCGTG CAGTTCCGCC GCGCGACACT GAAGCTCGAG
GTCGAGCCGC AGATCACGCC CGACGGGCGC GTCGTGCTCG ACCTCGACGT GACGAAGGAC
AGCATCGGCG AGCCGACCGC GGCCGGCCCG GCGATTCATA CGAAGCACGT GCAGACGCGC
GTGGAGGTCG AAAACGGCGG GACGGTCGCG ATCGGCGGGA TTTACGAGCA GTTGAACCGG
GATGATGTGA CGCGGGTGCC GCTGTTGGGC AAAATACCGG TACTGGGCGC GCTTTTCCGG
CACCGCGCGC GGCGCGACCA GCGCAGCGAA CTCGTCGTCT TCATCACGCC GACGGTCGTC
GGCACGCAGT GCGAGACGTC CGGCGCGGGC GATGCGGACG CGGGAAAAAG GGGGCCGGAA
GCCGGTGGCG CAGGCTCGAC AAGGCAGCCG CTTTGCCAGT AA
 
Protein sequence
MTKYGWWAIV FQVASCVATA HAALPPLPPL PPLPPAGWPI AAMQASVEDT PLPQGALDGA 
DGMNGAASAQ GGPQPFDQAA HAAVRAGTTA PVPLLEGPPI PLPPPTRMSD AAARHPGDAD
DARRISLNLQ GAGLAAAFDA LARFTGLNII VGEQVRGTVT LRLNNVRWRD AFDTLLDTHG
LAMSRRGNVI WVTPATELAA RERERFETHA RAADLEPLAS RTFALHYPRA LDVQRLLAGA
TGQRLLSKRG AAAADPRTNL LFVTDLAPRI VQIAGLIDAI DRPSRQVRIE ARIVEGEQGF
SRNLGARIAL RAQGRAPTAD GAASATDTRN ALDLAARPLG GFEAATAGFT LFAAPLSRVL
DVELSALEAQ GRGQIVSSPR VVTADRVKAI VEQGSELPYQ AKVGNGVSGV QFRRATLKLE
VEPQITPDGR VVLDLDVTKD SIGEPTAAGP AIHTKHVQTR VEVENGGTVA IGGIYEQLNR
DDVTRVPLLG KIPVLGALFR HRARRDQRSE LVVFITPTVV GTQCETSGAG DADAGKRGPE
AGGAGSTRQP LCQ