Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_0319 |
Symbol | |
ID | 6175988 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010551 |
Strand | + |
Start bp | 358686 |
End bp | 360347 |
Gene Length | 1662 bp |
Protein Length | 553 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 641680064 |
Product | type IV pilus secretin PilQ |
Protein accession | YP_001807036 |
Protein GI | 172059384 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4796] Type II secretory pathway, component HofQ |
TIGRFAM ID | [TIGR02515] type IV pilus secretin (or competence protein) PilQ |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 0.935194 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGAAAT ACGGATGGTG GGCGATCGTA TTCCAGGTCG CGTCATGCGT GGCCACGGCG CACGCGGCGC TACCGCCTTT GCCCCCGCTG CCCCCTTTAC CGCCGGCCGG CTGGCCGATC GCAGCGATGC AGGCGTCTGT CGAGGACACA CCGCTGCCGC AGGGCGCGCT CGATGGCGCG GACGGCATGA ACGGTGCCGC ATCCGCACAG GGCGGCCCAC AGCCGTTCGA TCAGGCCGCA CATGCAGCGG TTCGGGCAGG CACGACCGCG CCGGTACCGT TGCTGGAAGG GCCGCCGATC CCGTTGCCAC CGCCGACGCG CATGAGCGAC GCCGCGGCGC GGCACCCCGG CGATGCGGAC GACGCGCGGC GGATCTCGCT GAACCTGCAA GGCGCCGGGC TCGCGGCTGC ATTCGATGCG CTCGCGCGGT TCACCGGGCT CAACATCATC GTCGGCGAAC AGGTGCGCGG CACCGTGACG TTACGTCTGA ACAATGTCCG CTGGCGCGAT GCGTTCGATA CGTTGCTCGA CACGCACGGG CTGGCCATGT CGCGGCGCGG CAACGTGATC TGGGTCACGC CGGCGACCGA ACTCGCCGCG CGCGAGCGCG AGCGCTTCGA AACGCACGCC CGCGCGGCCG ATCTGGAGCC GCTCGCGAGC CGGACCTTCG CGCTGCATTA CCCGCGCGCG CTGGACGTGC AGCGGCTGCT GGCCGGTGCG ACCGGACAGC GCCTGCTGTC GAAACGCGGC GCCGCGGCGG CCGATCCGCG CACGAACCTG CTGTTCGTCA CAGATCTTGC GCCGCGCATC GTGCAGATCG CGGGGCTGAT CGACGCGATC GATCGGCCGT CGCGACAGGT GCGGATCGAG GCGCGCATCG TCGAAGGCGA ACAGGGCTTT TCGCGCAACC TCGGCGCTCG CATCGCGTTG CGCGCGCAGG GACGGGCGCC CACGGCCGAC GGCGCGGCAT CCGCGACCGA CACGCGCAAC GCGCTCGATC TCGCCGCGCG GCCGCTCGGC GGCTTCGAGG CGGCGACGGC CGGCTTCACG TTGTTCGCCG CGCCGCTCAG CCGCGTGCTC GACGTCGAGC TGAGCGCGCT CGAGGCACAG GGCCGGGGCC AGATCGTGTC CAGCCCGCGC GTGGTCACGG CCGACCGCGT GAAGGCGATC GTCGAACAGG GCTCGGAGCT GCCGTATCAG GCGAAGGTCG GCAATGGCGT GAGTGGCGTG CAGTTCCGCC GCGCGACACT GAAGCTCGAG GTCGAGCCGC AGATCACGCC CGACGGGCGC GTCGTGCTCG ACCTCGACGT GACGAAGGAC AGCATCGGCG AGCCGACCGC GGCCGGCCCG GCGATTCATA CGAAGCACGT GCAGACGCGC GTGGAGGTCG AAAACGGCGG GACGGTCGCG ATCGGCGGGA TTTACGAGCA GTTGAACCGG GATGATGTGA CGCGGGTGCC GCTGTTGGGC AAAATACCGG TACTGGGCGC GCTTTTCCGG CACCGCGCGC GGCGCGACCA GCGCAGCGAA CTCGTCGTCT TCATCACGCC GACGGTCGTC GGCACGCAGT GCGAGACGTC CGGCGCGGGC GATGCGGACG CGGGAAAAAG GGGGCCGGAA GCCGGTGGCG CAGGCTCGAC AAGGCAGCCG CTTTGCCAGT AA
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Protein sequence | MTKYGWWAIV FQVASCVATA HAALPPLPPL PPLPPAGWPI AAMQASVEDT PLPQGALDGA DGMNGAASAQ GGPQPFDQAA HAAVRAGTTA PVPLLEGPPI PLPPPTRMSD AAARHPGDAD DARRISLNLQ GAGLAAAFDA LARFTGLNII VGEQVRGTVT LRLNNVRWRD AFDTLLDTHG LAMSRRGNVI WVTPATELAA RERERFETHA RAADLEPLAS RTFALHYPRA LDVQRLLAGA TGQRLLSKRG AAAADPRTNL LFVTDLAPRI VQIAGLIDAI DRPSRQVRIE ARIVEGEQGF SRNLGARIAL RAQGRAPTAD GAASATDTRN ALDLAARPLG GFEAATAGFT LFAAPLSRVL DVELSALEAQ GRGQIVSSPR VVTADRVKAI VEQGSELPYQ AKVGNGVSGV QFRRATLKLE VEPQITPDGR VVLDLDVTKD SIGEPTAAGP AIHTKHVQTR VEVENGGTVA IGGIYEQLNR DDVTRVPLLG KIPVLGALFR HRARRDQRSE LVVFITPTVV GTQCETSGAG DADAGKRGPE AGGAGSTRQP LCQ
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