| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_0302 |
|---|
| Symbol | |
|---|
| ID | 6177529 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010551 |
|---|
| Strand | + |
|---|
| Start bp | 340591 |
|---|
| End bp | 341568 |
|---|
| Gene Length | 978 bp |
|---|
| Protein Length | 325 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 641680047 |
|---|
| Product | DNA-directed RNA polymerase subunit alpha |
|---|
| Protein accession | YP_001807019 |
|---|
| Protein GI | 172059367 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0202] DNA-directed RNA polymerase, alpha subunit/40 kD subunit |
|---|
| TIGRFAM ID | [TIGR02027] DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.521429 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.0299411 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAACCA GTTTGCTGAA ACCCAAGATC ATCGCCGTGG AATCGCTTGG CGAGAACCAC
GCGAGGGTGG TCATGGAACC GTTCGAACGC GGTTACGGCC ACACCTTGGG CAATGCGCTT
CGCCGCGTGC TGCTGTCGTC GATGGTTGGC TACGCGCCGA CCGAAGTCAC GATCGCGGGC
GTGGTGCACG AGTACTCGAC GCTTGATGGC GTGCAAGAGG ACGTCGTCAA CCTGCTGCTG
AACCTGAAGG GTGTGGTGTT CAAGCTGCAC AACCGTGACG AAGTGACGGT TACCCTGCGC
AAGGAAGGCG AAGGCGTCGT GACGGCCGGC GATATCGAGC TGGCGCACGA TTGCGAAGTC
ATCAACCCGA ATCACGTGAT CGCACACCTG TCGAAGGGCG GCAAGCTCGA CGTTCAGATC
AAGATCGAAA AGGGTCGCGG CTACGTTCCC GGCAACGTCC GTCGCTACGG CGAAGACACG
GCCAAGATCA TCGGCCGCAT CGTCCTCGAC GCATCGTTCT CGCCGGTTCG CCGCGTGAGC
TATGCCGTTG AAAGCGCACG TGTCGAGCAG CGTACCGACC TCGACAAGCT CGTGATGAAC
ATCGAGACGA GCGGCGTGAT CACCCCGGAA GAGGCGATCC GTCAATCGGC CCGCATCCTG
GTCGACCAGC TGTCCGTGTT CGCGGCACTG GAAGGCACGG AAACGGCTGC CGAAGCACCG
TCGCGCGCGC CGCAGATCGA TCCGATCCTG CTGCGTCCGG TGGATGATCT CGAGTTGACG
GTTCGTTCGG CGAACTGTCT GAAGGCCGAG AACATCTACT ACATCGGCGA CCTGATCCAG
CGCACGGAAA ACGAGCTGCT GAAGACGCCG AACCTCGGTC GCAAGTCGCT CAACGAGATC
AAGGAAGTGC TCGCTTCGCG CGGTCTCACG CTGGGCATGA AGCTCGAAAA CTGGCCGCCG
GCTGGTCTCG ACAAGTAA
|
|---|
| Protein sequence | MQTSLLKPKI IAVESLGENH ARVVMEPFER GYGHTLGNAL RRVLLSSMVG YAPTEVTIAG
VVHEYSTLDG VQEDVVNLLL NLKGVVFKLH NRDEVTVTLR KEGEGVVTAG DIELAHDCEV
INPNHVIAHL SKGGKLDVQI KIEKGRGYVP GNVRRYGEDT AKIIGRIVLD ASFSPVRRVS
YAVESARVEQ RTDLDKLVMN IETSGVITPE EAIRQSARIL VDQLSVFAAL EGTETAAEAP
SRAPQIDPIL LRPVDDLELT VRSANCLKAE NIYYIGDLIQ RTENELLKTP NLGRKSLNEI
KEVLASRGLT LGMKLENWPP AGLDK
|
|---|
| |