| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_0301 |
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| Symbol | rpsD |
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| ID | 6178228 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010551 |
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| Strand | + |
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| Start bp | 339843 |
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| End bp | 340466 |
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| Gene Length | 624 bp |
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| Protein Length | 207 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 641680046 |
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| Product | 30S ribosomal protein S4 |
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| Protein accession | YP_001807018 |
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| Protein GI | 172059366 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0522] Ribosomal protein S4 and related proteins |
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| TIGRFAM ID | [TIGR01017] ribosomal protein S4, bacterial/organelle type |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.152221 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.0772792 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | GTGGCACGTT ATATCGGCCC CAAGGCCAAG CTGTCCCGCC GTGAAGGCAC CGACCTGTTC
CTGAAGAGCG CGCGCCGCTC GCTCGCCGAC AAGTGCAAGC TCGACAGCAA GCCGGGTCAG
CACGGCCGTA CCTCGGGCGC ACGCACGTCC GACTATGGTA CGCAGCTGCG CGAAAAGCAG
AAGGTCAAGC GTATTTACGG CGTGCTGGAG CGTCAGTTCC GCCGCTACTT CGCTGAAGCC
GACCGCCGCA AGGGCAACAC GGGTGAGAAC CTGCTGCAAC TGCTCGAGTC GCGTCTCGAC
AACGTCGTGT ATCGCATGGG CTTCGGCTCG ACCCGCGCTG AAGCGCGTCA GCTCGTGAGC
CACAAGTCGA TCACCGTGAA CGGCGTCGTC GCGAACGTGC CGTCGCAGCA AGTGAAGGCG
GGTGACGTCG TCGCGATCCG CGAAAAGGCG AAGAAGCAGG CGCGTATCGT CGAAGCGCTG
TCGCTGGCCG AGCAAGGCGG CATGCCGAGC TGGGTTGCAG TCGATGCGAA GAAGTTCGAA
GGCACGTTCA AGCAAATGCC GGAACGCGCT GACATCGCAG GCGACATCAA CGAAAGCCTG
ATCGTCGAAT TGTATTCGCG TTAA
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| Protein sequence | MARYIGPKAK LSRREGTDLF LKSARRSLAD KCKLDSKPGQ HGRTSGARTS DYGTQLREKQ
KVKRIYGVLE RQFRRYFAEA DRRKGNTGEN LLQLLESRLD NVVYRMGFGS TRAEARQLVS
HKSITVNGVV ANVPSQQVKA GDVVAIREKA KKQARIVEAL SLAEQGGMPS WVAVDAKKFE
GTFKQMPERA DIAGDINESL IVELYSR
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