| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_0277 |
|---|
| Symbol | rplD |
|---|
| ID | 6177984 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010551 |
|---|
| Strand | + |
|---|
| Start bp | 328607 |
|---|
| End bp | 329227 |
|---|
| Gene Length | 621 bp |
|---|
| Protein Length | 206 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 641680022 |
|---|
| Product | 50S ribosomal protein L4 |
|---|
| Protein accession | YP_001806994 |
|---|
| Protein GI | 172059342 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0088] Ribosomal protein L4 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.00000000000696788 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.0754371 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAACTCA AGCTCCTGAA CGAAAATGGT CAGGAAGGTG CAGTGGTCAA CGCGTCGGAC
GTCGTGTTCG GTCGTGACTA CAACGAAGCG CTGATCCACC AGGTCGTCGT CGCGTACCAG
GCGAATGCTC GCCAGGGTAA CCGCGCACAG AAGGACCGTG AGCAAGTCAA GCACACCACC
AAGAAGCCGT GGCGTCAGAA GGGTACGGGC CGCGCTCGTG CCGGTATGTC GTCGAGCCCG
CTGTGGCGTG GCGGTGGTCG CATCTTCCCG AACTCGCCGG AAGAAAACTT CTCGCACAAG
GTCAACAAGA AGATGCATCG CGCAGGTCTC TGCTCGATCT TCTCGCAGCT GGCCCGTGAA
GGCCGTCTGT CGGTCGTCGA GGACATCATC CTTGAAGCGC CGAAGACCAA GCTGCTGGCT
GACAAATTCA AGACCATGGG TCTCGACTCC GTGCTGATCA TTACGGATAC GGTCGACGAG
AACCTGTACC TGGCTTCGCG CAACCTGCCG CACGTGGCGA TTGTCGAGCC GCGCTACGCT
GACCCGCTGT CGCTGATCTA CTTCAAGAAA GTGCTGGTCA CGAAGGCTGC GGTCGCCCAG
ATCGAGGAGT TGCTGTCATG A
|
|---|
| Protein sequence | MELKLLNENG QEGAVVNASD VVFGRDYNEA LIHQVVVAYQ ANARQGNRAQ KDREQVKHTT
KKPWRQKGTG RARAGMSSSP LWRGGGRIFP NSPEENFSHK VNKKMHRAGL CSIFSQLARE
GRLSVVEDII LEAPKTKLLA DKFKTMGLDS VLIITDTVDE NLYLASRNLP HVAIVEPRYA
DPLSLIYFKK VLVTKAAVAQ IEELLS
|
|---|
| |