| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_0138 |
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| Symbol | |
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| ID | 6176342 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010551 |
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| Strand | - |
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| Start bp | 161347 |
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| End bp | 163050 |
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| Gene Length | 1704 bp |
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| Protein Length | 567 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641679873 |
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| Product | thiamine pyrophosphate protein |
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| Protein accession | YP_001806856 |
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| Protein GI | 172059204 |
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| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
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| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGCATT CCAAGGATCT CGAGCAGAGC GTCACCACCG GCGCGCGACT CCTCGTCGAT
GCGTTGCTCG CCAATCACGT CGAACGCGCG TTCTGCGTGC CGGGCGAGAG CTTCCTCGCC
GTACTCGATG CGCTCGCGGA TCACACCGCG CGCATCCAGA CGGTCGTCTG CCGCCACGAG
GCGGCCGCCG CGAACATGGC GGAGGCGGTC GGCAAGCTGA CCGGCCGCCC CGGCATCGCG
TTCGTCACAC GCGGGCCCGG CGCGACCCAC GCGTCGATCG GCGTGCACAC CGCGTTCCAG
GATTCGACGC CGATGATCCT GTTCGTCGGC CAGTGCGCAC GCGAGCACCT CGACCGCGAA
GCCTTCCAGG AAATCGACTA CCGGCGGATG TTCGGCCAGA TGGCGAAATG GGTCGCGCAG
ATCGACGACC CGCGCCGCAT TCCCGAATAC CTGAGCCATG CGTTCCACGT CGCAACTTCC
GGTCGCCCGG GCCCCGTCGT GCTCGCGCTG CCGGAGGACG TGCTGTCCGA AGCGTGCGCG
TCGCAACCGG TCGTGCCGGC CGCGAAACGT GTCGCGGCGT CGCCGTCGGC CACGCAGCTC
GACGAGCTGC GCGAACGGCT CGCGCATGCG GAACGGCCGT TCGCGATCGT CGGCGGCAGC
GGCTGGACGC CCGACGCATG TGCGAACCTG CGCACCTTCG TCGAGCGCTG GCAACTGCCG
GTCGCATGCG CGTTCCGCTT CCAGGACACC TTCGACAACG CGCACCCGAA CTACGCGGGC
GACGTCGGCC TCGGGATCAA TCCCGCGCTC GGCAAGCGGA TTCGCGACGC CGACCTGCTG
CTGGTGCTCG GCCCGCGCCT CGGCGAAGCA ACGACGGGCG GCTACACGCT GCTCGACATC
CCGAAAACGC GCCAGACGCT GATCCACGTG CACCAGGGCG CGGACGAGCT CGGCCGCGTG
TATGCGGCCG ACTTGCCGAT CGTGTCGGGG ATGCCGGAGA TCGCGGCGCC GCTCGCCGCG
CTCGAACCGC CGGCGCACCC GGCATGGGCC GACACGGCCG CCGATGCGCA CCGCGCGTAC
CGCGAATGGC ATGCGCCGCT GCCGATGCCC GGCGACGTCC AGCTCGGCGA CGTGATGGTG
CAGCTGCGCG AGCGCCTGCC GCACGACGCG ATCCTGACCA ACGGCGCCGG CAACTACGCG
ATCTGGCTGC ATCGCCACTT CGCGTACCGC CACTTCCGCT CGCAGCTCGC ACCGACCAGC
GGCGCGATGG GTTACGGGCT GCCCGCGGCG CTCGCCGCCA AGTCGCTGTA TCCGGAGCGG
GCCGTCGTCG CGCTCGCCGG CGACGGCTGC TTCATGATGG CCGGCAACGA ACTGGCCACC
GCGATGCAGT ACGGGCTGAA CATCGTCGCG ATCGTCGTCA ACAACGGGCA TTTCGGTACG
ATCCGCATGC ATCAGGAGCG CAACTATCCG GGGCGCGTGC ACGGCACGGG GCTCACGAAC
CCCGATTTCG CCGCGTATGC GCGCGCGTTC GGCGCGCATG GCGAGACGGT CGAGCGCACC
GCCGACTTCG CGCCGGCACT GGAGCGCGCG CTGACCTGCG GGCTGCCGGC GCTGATCGAG
ATCCGCATCC CGCAGGACGC CAGCACGCCG GCCGCGACGC TCGAGCAGAT CCGCGAGCAG
GGCCGCCGGG CACGCGGCGC ATGA
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| Protein sequence | MSHSKDLEQS VTTGARLLVD ALLANHVERA FCVPGESFLA VLDALADHTA RIQTVVCRHE
AAAANMAEAV GKLTGRPGIA FVTRGPGATH ASIGVHTAFQ DSTPMILFVG QCAREHLDRE
AFQEIDYRRM FGQMAKWVAQ IDDPRRIPEY LSHAFHVATS GRPGPVVLAL PEDVLSEACA
SQPVVPAAKR VAASPSATQL DELRERLAHA ERPFAIVGGS GWTPDACANL RTFVERWQLP
VACAFRFQDT FDNAHPNYAG DVGLGINPAL GKRIRDADLL LVLGPRLGEA TTGGYTLLDI
PKTRQTLIHV HQGADELGRV YAADLPIVSG MPEIAAPLAA LEPPAHPAWA DTAADAHRAY
REWHAPLPMP GDVQLGDVMV QLRERLPHDA ILTNGAGNYA IWLHRHFAYR HFRSQLAPTS
GAMGYGLPAA LAAKSLYPER AVVALAGDGC FMMAGNELAT AMQYGLNIVA IVVNNGHFGT
IRMHQERNYP GRVHGTGLTN PDFAAYARAF GAHGETVERT ADFAPALERA LTCGLPALIE
IRIPQDASTP AATLEQIREQ GRRARGA
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