Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_0112 |
Symbol | putA |
ID | 6176861 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010551 |
Strand | + |
Start bp | 127376 |
End bp | 131308 |
Gene Length | 3933 bp |
Protein Length | 1310 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 641679847 |
Product | trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase |
Protein accession | YP_001806830 |
Protein GI | 172059178 |
COG category | [C] Energy production and conversion [E] Amino acid transport and metabolism |
COG ID | [COG0506] Proline dehydrogenase [COG4230] Delta 1-pyrroline-5-carboxylate dehydrogenase |
TIGRFAM ID | [TIGR01238] delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain) |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGCAAGCA CGACTCTCGG CGTCAAAGTC GACGACCTTC TCCGCTCGCG CCTGAAAGAC GCGGCCGCGC GTCTCGAGCG CACTCCCCAC TGGCTGATCA AGCAGGCGAT CTTCGCGTAT CTCGAGCGGA TCGAGCACGG CCAGTTGCCG CCCGAGCTGT CGGGCCACAG CGGCGTGACG GAGCTCGCCG ACGGTCAGGC GGCGGACAGC GACGACGACA ACTCGCCGCA TCCGTTCCTC GAGTTCGCGC AGAACGTGCA GCCGCAATCG GTGCTGCGCG CGGCGATCAC GGCCGCGTAT CGCCGCCCCG AGCCCGAATG CGTGCCGTTC CTGCTGGGCC AGGCGCGCCT GCCGGCCAAC CTGCAGGCCG ATGCGCAGGC GCTCGCGACG ACGCTCGTCG AGGCGCTGCG CGAGAAGAAC TCGGGCGGCG GCGTCGAAGG GCTGATCCAC GAGTTCTCGC TGTCGAGCCA GGAAGGCGTC GCGCTGATGT GTCTCGCCGA AGCGCTGCTG CGCATTCCGG ATCGCGCGAC GCGCGATGCG CTGATCCGCG ACAAGATCAG CAAGGGCGAC TGGCGCTCGC ACGTCGGCCA CGCGCCGTCG CTGTTCGTGA ACGCGGCGAC CTGGGGGCTG ATGATCACCG GCAAGCTCGT GACGACCAAC AGCGAAGCGG GCCTGTCGTC GGCGCTCACG CGCCTGATCG GCCGCGGCGG CGAGCCGCTG ATCCGCAAGG GCGTCGACAT GGCGATGCGC CTGATGGGCG AGCAGTTCGT CACCGGCGAG ACGATTTCCG AGGCGCTCGC GAACAGCCGC AAGTACGAAG CGCGCGGCTT CCGCTACTCG TACGACATGC TCGGCGAAGC GGCGACGACC GAAGAGGACG CGCTGCGCTA CTACGCGTCG TACGAGCAGG CGATCCACGC GATCGGCAAG GCGGCCGGCG GCCGCGGCAT CTACGAAGGC CCGGGCATCT CGATCAAGCT GTCGGCGCTG CACGCGCGCT ACGCGCGCTC GCAGCAGGAC CGCACGATGA GCGAATTGCT GCCGCGCGTG CGCGCGCTGG CGCTGCTCGC GCGCCGCTAC GACATCGGCC TGAACATCGA CGCGGAAGAA GCCGACCGTC TCGAACTGTC GCTGGACCTG CTCGAGGCGC TGTGCTTCGA TCCGGAGCTC GCGGGCTGGA GCGGCATCGG CTTCGTCGTG CAGGGCTACC AGAAGCGCTG CCCGTTCGTG ATCGACTACC TGATCGATCT CGCGCGCCGC AGCCGTCACC GCCTGATGAT CCGCCTGGTC AAGGGCGCGT ACTGGGACAG CGAAATCAAG CGTGCGCAGG TCGACGGCCT CGAAGGCTAT CCGGTCTACA CGCGCAAGAT CTACACGGAC GTGTCGTACC TCGCGTGCGC GAAGAAGCTG CTCGCGGCGC CCGACGCCGT CTACCCGCAG TTCGCGACGC ACAACGCGTA CACGCTGGCC GCGATCTATC ACCTCGCCGG CCACAACTAC TACCCGGGCC AGTACGAATT CCAGTGCCTG CACGGGATGG GCGAGCCGCT GTACGAGGAA GTCACGGGCC GCGACAAGCT GAACCGTCCG TGCCGCGTGT ACGCGCCGGT CGGCACGCAT GAAACGCTGC TCGCGTACCT GGTGCGCCGC CTGCTCGAGA ACGGCGCGAA CACGTCGTTC GTGAACCGCA TCGCCGACAA GACCGTGTCG GTGAAGGAAC TGGTCGCCGA TCCGGTCGAC GAGGCGTCGA AGATCGTGCC GCTCGGTGCG CCGCACGCGA AGATCCCGCT GCCGCGCAAC CTGTACGGCG ACGAGCGTCC CAATTCGATG GGCCTCGACC TGTCGAACGA ACACCGTCTC GCGTCGCTGT CGTCCGCGCT GCTCGCGAGC GCGCATCATC CGTGGCGCGC GGCGCCGATG CTCGCCGACG ACGCGCTCGC CGACGCACCG GCGCGCGACG TGCGCAACCC GGCTGACCTG CGCGACGTGG TCGGCACGGT CAGCGAAGCG ACGGCCGAAC ACGTGAGCGC GGCGCTCGCG CATGCGGTGG CTGCCGCGCC GATCTGGCAG GCGACGCCGG TCGATGCGCG CGCCGACTGC CTGGTGCGCG CGGCCGACCT GCTCGAAGCG CAGATGCACA CGCTGATGGG CCTGATCGTG CGCGAGGCCG GCAAGTCGCT GCCGAACGCG ATCGCCGAAA TCCGCGAAGC CGTCGACTTC CTGCGCTACT ACGCGGCGCA GATCCGCGAC GAATTCTCGA ACGACACGCA CCGGCCGCTC GGCCCGGTGG TCTGCATCAG CCCGTGGAAC TTCCCGCTTG CGATCTTCAT GGGCCAGGTG GCCGCTGCAC TGGCAGCCGG CAACACGGTG CTCGCGAAAC CGGCCGAACA GACGCCGCTG ATCGCCGCGC AGGCCGTGCG CCTGCTGCGC GAGGCCGGCG TGCCGGCCGG CGCGGTGCAG TTGCTGCCGG GCACCGGCGA GACCGTCGGC GCGGCGCTGG TCGCCGATCC GCGCACGCGC GCGGTGATGT TCACCGGCTC GACCGAAGTC GCGCGCCTGA TCAACAAGAC GCTGTCCGCG CGCCTCGACC CGGACGGCAA GCCGATTCCG CTGATCGCGG AAACGGGCGG CCAGAACGCG ATGATCGTCG ACTCGTCGGC GCTCGCGGAG CAGGTGGTCG CGGACGTGCT GCAGTCGTCG TTCGACTCGG CCGGTCAACG GTGTTCGGCG CTGCGCGTTC TGTGTCTGCA GGACGACGTC GCGGACCGCA CGCTGACGAT GCTCAAGGGC GCGATGCACG AGCTGGCGCT CGGCAACCCG GACCGTCTGT CGACCGACGT CGGCCCGGTG ATCGACGCCG AAGCGAAGCA GACGATCGAC ACGCACGTCG CGACGATGAA GGACAAGGGC CACACGGTCA CGCAGCTGCC GGCGCCGGAA GTTTGCGCGC ACGGCACGTT CGTGCCGCCG ACGCTGATCG AGATCGGCAG CATCGACGAG CTCAAGCGTG AGGTGTTCGG CCCCGTGCTG CACGTCGTGC GCTACCGCCG CAATCAGCTC GACAAGCTGC TCGAGCAGAT CCGCGCGACC GGTTACGGCC TGACGCTCGG GATCCACACG CGGATCGACG AGACGATCGC ACACGTGATC TCGAACGCGC ACGTCGGCAA CATCTACGTG AACCGCAACG TGATCGGCGC GGTGGTCGGC GTGCAGCCGT TCGGCGGCGA AGGGCTGTCG GGCACGGGCC CGAAGGCCGG CGGCGCGCTG TACCTGCAGC GCCTGCTCGC GACGCGTCCG TCGGGCCTGC CGCGTTCGCT CGCGCAGATG CTGATCGCGG ACGGCACGGT CGAAGGCGAC CAGCGCGGCA ACCCGGCGGC GGCGCTCACC ACGCTGCGCG ACTGGCTGAT CGAGCAGCGC GAACCGGCGC TGGCCGCGCG CTGCGACGGC TACCTCGCGC AGGTGCCGGC TGGCGCGACC GCGGTGCTGA CCGGCCCGAC GGGCGAGCGA AACACGTATA CACTCGGCCC GCGCGGCACG GTGCTGTGCG TCGCGGCGAC GCCGAGCGGT GCGCGTGCGC AGTTCGCGGC GGTGCTGGCG ACGGGCAACC GCGCATTGTT CGCCGGTGCG GCAGGCGAGG CGCTGGTCGC GGCGCTGCCG GCTGCGCTGA AGGCGCATGC GACCGTGCGC AAGCAGCCCG ACGCGCCGTT CGACGCGGTG CTGTTCGAAG GCGACAGCGA CGAGCTGCAG ACGCTCGTGA AGGACGTCGC GCAGCGGCCG GGCCCGATCG TGTCGGTGCA GGGCGTGTCG GCGGGCGCGT TCGAGAACGG CGACGCGGAA GACTACGCGC TCGAGCGGCT GCTGACCGAG CGCTCGGTCA GCGTGAACAC GGCCGCGGCG GGCGGCAATG CGAATTTGAT GACGATCGGC TGA
|
Protein sequence | MASTTLGVKV DDLLRSRLKD AAARLERTPH WLIKQAIFAY LERIEHGQLP PELSGHSGVT ELADGQAADS DDDNSPHPFL EFAQNVQPQS VLRAAITAAY RRPEPECVPF LLGQARLPAN LQADAQALAT TLVEALREKN SGGGVEGLIH EFSLSSQEGV ALMCLAEALL RIPDRATRDA LIRDKISKGD WRSHVGHAPS LFVNAATWGL MITGKLVTTN SEAGLSSALT RLIGRGGEPL IRKGVDMAMR LMGEQFVTGE TISEALANSR KYEARGFRYS YDMLGEAATT EEDALRYYAS YEQAIHAIGK AAGGRGIYEG PGISIKLSAL HARYARSQQD RTMSELLPRV RALALLARRY DIGLNIDAEE ADRLELSLDL LEALCFDPEL AGWSGIGFVV QGYQKRCPFV IDYLIDLARR SRHRLMIRLV KGAYWDSEIK RAQVDGLEGY PVYTRKIYTD VSYLACAKKL LAAPDAVYPQ FATHNAYTLA AIYHLAGHNY YPGQYEFQCL HGMGEPLYEE VTGRDKLNRP CRVYAPVGTH ETLLAYLVRR LLENGANTSF VNRIADKTVS VKELVADPVD EASKIVPLGA PHAKIPLPRN LYGDERPNSM GLDLSNEHRL ASLSSALLAS AHHPWRAAPM LADDALADAP ARDVRNPADL RDVVGTVSEA TAEHVSAALA HAVAAAPIWQ ATPVDARADC LVRAADLLEA QMHTLMGLIV REAGKSLPNA IAEIREAVDF LRYYAAQIRD EFSNDTHRPL GPVVCISPWN FPLAIFMGQV AAALAAGNTV LAKPAEQTPL IAAQAVRLLR EAGVPAGAVQ LLPGTGETVG AALVADPRTR AVMFTGSTEV ARLINKTLSA RLDPDGKPIP LIAETGGQNA MIVDSSALAE QVVADVLQSS FDSAGQRCSA LRVLCLQDDV ADRTLTMLKG AMHELALGNP DRLSTDVGPV IDAEAKQTID THVATMKDKG HTVTQLPAPE VCAHGTFVPP TLIEIGSIDE LKREVFGPVL HVVRYRRNQL DKLLEQIRAT GYGLTLGIHT RIDETIAHVI SNAHVGNIYV NRNVIGAVVG VQPFGGEGLS GTGPKAGGAL YLQRLLATRP SGLPRSLAQM LIADGTVEGD QRGNPAAALT TLRDWLIEQR EPALAARCDG YLAQVPAGAT AVLTGPTGER NTYTLGPRGT VLCVAATPSG ARAQFAAVLA TGNRALFAGA AGEALVAALP AALKAHATVR KQPDAPFDAV LFEGDSDELQ TLVKDVAQRP GPIVSVQGVS AGAFENGDAE DYALERLLTE RSVSVNTAAA GGNANLMTIG
|
| |