Gene BamMC406_0112 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_0112 
SymbolputA 
ID6176861 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010551 
Strand
Start bp127376 
End bp131308 
Gene Length3933 bp 
Protein Length1310 aa 
Translation table11 
GC content70% 
IMG OID641679847 
Producttrifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase 
Protein accessionYP_001806830 
Protein GI172059178 
COG category[C] Energy production and conversion
[E] Amino acid transport and metabolism 
COG ID[COG0506] Proline dehydrogenase
[COG4230] Delta 1-pyrroline-5-carboxylate dehydrogenase 
TIGRFAM ID[TIGR01238] delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain) 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCAAGCA CGACTCTCGG CGTCAAAGTC GACGACCTTC TCCGCTCGCG CCTGAAAGAC 
GCGGCCGCGC GTCTCGAGCG CACTCCCCAC TGGCTGATCA AGCAGGCGAT CTTCGCGTAT
CTCGAGCGGA TCGAGCACGG CCAGTTGCCG CCCGAGCTGT CGGGCCACAG CGGCGTGACG
GAGCTCGCCG ACGGTCAGGC GGCGGACAGC GACGACGACA ACTCGCCGCA TCCGTTCCTC
GAGTTCGCGC AGAACGTGCA GCCGCAATCG GTGCTGCGCG CGGCGATCAC GGCCGCGTAT
CGCCGCCCCG AGCCCGAATG CGTGCCGTTC CTGCTGGGCC AGGCGCGCCT GCCGGCCAAC
CTGCAGGCCG ATGCGCAGGC GCTCGCGACG ACGCTCGTCG AGGCGCTGCG CGAGAAGAAC
TCGGGCGGCG GCGTCGAAGG GCTGATCCAC GAGTTCTCGC TGTCGAGCCA GGAAGGCGTC
GCGCTGATGT GTCTCGCCGA AGCGCTGCTG CGCATTCCGG ATCGCGCGAC GCGCGATGCG
CTGATCCGCG ACAAGATCAG CAAGGGCGAC TGGCGCTCGC ACGTCGGCCA CGCGCCGTCG
CTGTTCGTGA ACGCGGCGAC CTGGGGGCTG ATGATCACCG GCAAGCTCGT GACGACCAAC
AGCGAAGCGG GCCTGTCGTC GGCGCTCACG CGCCTGATCG GCCGCGGCGG CGAGCCGCTG
ATCCGCAAGG GCGTCGACAT GGCGATGCGC CTGATGGGCG AGCAGTTCGT CACCGGCGAG
ACGATTTCCG AGGCGCTCGC GAACAGCCGC AAGTACGAAG CGCGCGGCTT CCGCTACTCG
TACGACATGC TCGGCGAAGC GGCGACGACC GAAGAGGACG CGCTGCGCTA CTACGCGTCG
TACGAGCAGG CGATCCACGC GATCGGCAAG GCGGCCGGCG GCCGCGGCAT CTACGAAGGC
CCGGGCATCT CGATCAAGCT GTCGGCGCTG CACGCGCGCT ACGCGCGCTC GCAGCAGGAC
CGCACGATGA GCGAATTGCT GCCGCGCGTG CGCGCGCTGG CGCTGCTCGC GCGCCGCTAC
GACATCGGCC TGAACATCGA CGCGGAAGAA GCCGACCGTC TCGAACTGTC GCTGGACCTG
CTCGAGGCGC TGTGCTTCGA TCCGGAGCTC GCGGGCTGGA GCGGCATCGG CTTCGTCGTG
CAGGGCTACC AGAAGCGCTG CCCGTTCGTG ATCGACTACC TGATCGATCT CGCGCGCCGC
AGCCGTCACC GCCTGATGAT CCGCCTGGTC AAGGGCGCGT ACTGGGACAG CGAAATCAAG
CGTGCGCAGG TCGACGGCCT CGAAGGCTAT CCGGTCTACA CGCGCAAGAT CTACACGGAC
GTGTCGTACC TCGCGTGCGC GAAGAAGCTG CTCGCGGCGC CCGACGCCGT CTACCCGCAG
TTCGCGACGC ACAACGCGTA CACGCTGGCC GCGATCTATC ACCTCGCCGG CCACAACTAC
TACCCGGGCC AGTACGAATT CCAGTGCCTG CACGGGATGG GCGAGCCGCT GTACGAGGAA
GTCACGGGCC GCGACAAGCT GAACCGTCCG TGCCGCGTGT ACGCGCCGGT CGGCACGCAT
GAAACGCTGC TCGCGTACCT GGTGCGCCGC CTGCTCGAGA ACGGCGCGAA CACGTCGTTC
GTGAACCGCA TCGCCGACAA GACCGTGTCG GTGAAGGAAC TGGTCGCCGA TCCGGTCGAC
GAGGCGTCGA AGATCGTGCC GCTCGGTGCG CCGCACGCGA AGATCCCGCT GCCGCGCAAC
CTGTACGGCG ACGAGCGTCC CAATTCGATG GGCCTCGACC TGTCGAACGA ACACCGTCTC
GCGTCGCTGT CGTCCGCGCT GCTCGCGAGC GCGCATCATC CGTGGCGCGC GGCGCCGATG
CTCGCCGACG ACGCGCTCGC CGACGCACCG GCGCGCGACG TGCGCAACCC GGCTGACCTG
CGCGACGTGG TCGGCACGGT CAGCGAAGCG ACGGCCGAAC ACGTGAGCGC GGCGCTCGCG
CATGCGGTGG CTGCCGCGCC GATCTGGCAG GCGACGCCGG TCGATGCGCG CGCCGACTGC
CTGGTGCGCG CGGCCGACCT GCTCGAAGCG CAGATGCACA CGCTGATGGG CCTGATCGTG
CGCGAGGCCG GCAAGTCGCT GCCGAACGCG ATCGCCGAAA TCCGCGAAGC CGTCGACTTC
CTGCGCTACT ACGCGGCGCA GATCCGCGAC GAATTCTCGA ACGACACGCA CCGGCCGCTC
GGCCCGGTGG TCTGCATCAG CCCGTGGAAC TTCCCGCTTG CGATCTTCAT GGGCCAGGTG
GCCGCTGCAC TGGCAGCCGG CAACACGGTG CTCGCGAAAC CGGCCGAACA GACGCCGCTG
ATCGCCGCGC AGGCCGTGCG CCTGCTGCGC GAGGCCGGCG TGCCGGCCGG CGCGGTGCAG
TTGCTGCCGG GCACCGGCGA GACCGTCGGC GCGGCGCTGG TCGCCGATCC GCGCACGCGC
GCGGTGATGT TCACCGGCTC GACCGAAGTC GCGCGCCTGA TCAACAAGAC GCTGTCCGCG
CGCCTCGACC CGGACGGCAA GCCGATTCCG CTGATCGCGG AAACGGGCGG CCAGAACGCG
ATGATCGTCG ACTCGTCGGC GCTCGCGGAG CAGGTGGTCG CGGACGTGCT GCAGTCGTCG
TTCGACTCGG CCGGTCAACG GTGTTCGGCG CTGCGCGTTC TGTGTCTGCA GGACGACGTC
GCGGACCGCA CGCTGACGAT GCTCAAGGGC GCGATGCACG AGCTGGCGCT CGGCAACCCG
GACCGTCTGT CGACCGACGT CGGCCCGGTG ATCGACGCCG AAGCGAAGCA GACGATCGAC
ACGCACGTCG CGACGATGAA GGACAAGGGC CACACGGTCA CGCAGCTGCC GGCGCCGGAA
GTTTGCGCGC ACGGCACGTT CGTGCCGCCG ACGCTGATCG AGATCGGCAG CATCGACGAG
CTCAAGCGTG AGGTGTTCGG CCCCGTGCTG CACGTCGTGC GCTACCGCCG CAATCAGCTC
GACAAGCTGC TCGAGCAGAT CCGCGCGACC GGTTACGGCC TGACGCTCGG GATCCACACG
CGGATCGACG AGACGATCGC ACACGTGATC TCGAACGCGC ACGTCGGCAA CATCTACGTG
AACCGCAACG TGATCGGCGC GGTGGTCGGC GTGCAGCCGT TCGGCGGCGA AGGGCTGTCG
GGCACGGGCC CGAAGGCCGG CGGCGCGCTG TACCTGCAGC GCCTGCTCGC GACGCGTCCG
TCGGGCCTGC CGCGTTCGCT CGCGCAGATG CTGATCGCGG ACGGCACGGT CGAAGGCGAC
CAGCGCGGCA ACCCGGCGGC GGCGCTCACC ACGCTGCGCG ACTGGCTGAT CGAGCAGCGC
GAACCGGCGC TGGCCGCGCG CTGCGACGGC TACCTCGCGC AGGTGCCGGC TGGCGCGACC
GCGGTGCTGA CCGGCCCGAC GGGCGAGCGA AACACGTATA CACTCGGCCC GCGCGGCACG
GTGCTGTGCG TCGCGGCGAC GCCGAGCGGT GCGCGTGCGC AGTTCGCGGC GGTGCTGGCG
ACGGGCAACC GCGCATTGTT CGCCGGTGCG GCAGGCGAGG CGCTGGTCGC GGCGCTGCCG
GCTGCGCTGA AGGCGCATGC GACCGTGCGC AAGCAGCCCG ACGCGCCGTT CGACGCGGTG
CTGTTCGAAG GCGACAGCGA CGAGCTGCAG ACGCTCGTGA AGGACGTCGC GCAGCGGCCG
GGCCCGATCG TGTCGGTGCA GGGCGTGTCG GCGGGCGCGT TCGAGAACGG CGACGCGGAA
GACTACGCGC TCGAGCGGCT GCTGACCGAG CGCTCGGTCA GCGTGAACAC GGCCGCGGCG
GGCGGCAATG CGAATTTGAT GACGATCGGC TGA
 
Protein sequence
MASTTLGVKV DDLLRSRLKD AAARLERTPH WLIKQAIFAY LERIEHGQLP PELSGHSGVT 
ELADGQAADS DDDNSPHPFL EFAQNVQPQS VLRAAITAAY RRPEPECVPF LLGQARLPAN
LQADAQALAT TLVEALREKN SGGGVEGLIH EFSLSSQEGV ALMCLAEALL RIPDRATRDA
LIRDKISKGD WRSHVGHAPS LFVNAATWGL MITGKLVTTN SEAGLSSALT RLIGRGGEPL
IRKGVDMAMR LMGEQFVTGE TISEALANSR KYEARGFRYS YDMLGEAATT EEDALRYYAS
YEQAIHAIGK AAGGRGIYEG PGISIKLSAL HARYARSQQD RTMSELLPRV RALALLARRY
DIGLNIDAEE ADRLELSLDL LEALCFDPEL AGWSGIGFVV QGYQKRCPFV IDYLIDLARR
SRHRLMIRLV KGAYWDSEIK RAQVDGLEGY PVYTRKIYTD VSYLACAKKL LAAPDAVYPQ
FATHNAYTLA AIYHLAGHNY YPGQYEFQCL HGMGEPLYEE VTGRDKLNRP CRVYAPVGTH
ETLLAYLVRR LLENGANTSF VNRIADKTVS VKELVADPVD EASKIVPLGA PHAKIPLPRN
LYGDERPNSM GLDLSNEHRL ASLSSALLAS AHHPWRAAPM LADDALADAP ARDVRNPADL
RDVVGTVSEA TAEHVSAALA HAVAAAPIWQ ATPVDARADC LVRAADLLEA QMHTLMGLIV
REAGKSLPNA IAEIREAVDF LRYYAAQIRD EFSNDTHRPL GPVVCISPWN FPLAIFMGQV
AAALAAGNTV LAKPAEQTPL IAAQAVRLLR EAGVPAGAVQ LLPGTGETVG AALVADPRTR
AVMFTGSTEV ARLINKTLSA RLDPDGKPIP LIAETGGQNA MIVDSSALAE QVVADVLQSS
FDSAGQRCSA LRVLCLQDDV ADRTLTMLKG AMHELALGNP DRLSTDVGPV IDAEAKQTID
THVATMKDKG HTVTQLPAPE VCAHGTFVPP TLIEIGSIDE LKREVFGPVL HVVRYRRNQL
DKLLEQIRAT GYGLTLGIHT RIDETIAHVI SNAHVGNIYV NRNVIGAVVG VQPFGGEGLS
GTGPKAGGAL YLQRLLATRP SGLPRSLAQM LIADGTVEGD QRGNPAAALT TLRDWLIEQR
EPALAARCDG YLAQVPAGAT AVLTGPTGER NTYTLGPRGT VLCVAATPSG ARAQFAAVLA
TGNRALFAGA AGEALVAALP AALKAHATVR KQPDAPFDAV LFEGDSDELQ TLVKDVAQRP
GPIVSVQGVS AGAFENGDAE DYALERLLTE RSVSVNTAAA GGNANLMTIG