Gene BamMC406_0090 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_0090 
Symbol 
ID6176967 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010551 
Strand
Start bp100453 
End bp101610 
Gene Length1158 bp 
Protein Length385 aa 
Translation table11 
GC content66% 
IMG OID641679825 
Productextracellular ligand-binding receptor 
Protein accessionYP_001806808 
Protein GI172059156 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.230544 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGATGA ATCGATGGAT GGAGGTTTTG CTTGCCGCGG GCCTCGTGTG TGCGGCGGCC 
ACGGCGTCGG CACAGGTGAA GATCGGCGTG ACGCTGTCGG CCACCGGGCC GGCCGCATCG
CTCGGGATTC CGGAAAAGAA CACGATCGCG CTGCTGCCGA AGGAAATCGC GGGCAAGAGC
GTCCAGTACA TCGTGCTCGA CGATGCGTCC GACACGAGCC GCGCGGTGCA GAACGTGCGC
AAGCTGATCG ACGAGGATCA CGTCGACGCG ATCATCGGTT CGTCCGTCAC GCCGAATTCG
CTCGCGATGC TCGACCCGGT GTCGCAGGGC AAGACGCCGA CGATCTCGCT CGCGGCGAGT
GCGCAGATCA TCGCGCCGAT GGACACGAAG CGCGCGTGGA TGTTCAAGGT GCCGCAAAAC
GACCAGCTGA TGGCCGACGC GATCGCCGGC TACATGGCGA AGCACGGCGT GAAGACGATC
GGCTTCATCG GCTTCGCCGA CGCGTACGGC GACAGCTGGT ACAACACATT CAACGCGGCC
GCGACGAAGA ACGGGTTGAA GGTCGTGTCG AACGAGCGCT ACAACCGCAC CGATGCGTCG
GTGATGGGGC AGGTGCTGAA GCTGCTGGGC TCGAATCCCG ACGCGGTGCT GATCGCCGGT
TCCGGCACGC CGGCCGCGCT GCCCGCCAAG ACGCTCAAGG AGCGCGGCTA CAAGGGCAAG
GTGTACCAGA CGCACGGCGT CGCGAACAAC GACTTCCTGC GCGTGTGCGG CAAGGATTGC
GAAGGCGAGA TCCTGCCGGC CGGGCCGGTG CTCGTGACCG ACCAGCTGCC CGATTCGAAT
CCGGTGAAGA AGCCGGCGCT CGGCTACAAG GCTGCGTACG AGAAGGCGTA CGGCGCGGGC
TCGCTGTCGA CCTTCGGCGG GCATGCGTGG GATGCGGGGC TGCTGCTGCA GCGTGCGATT
CCCGACGCGC TGAAGAAGGG CCAGCCAGGC ACCGAGGCGT TCCGCGAGGC GCTGCGCGCG
TCGCTCGAGA GCGTGAAGGA CCTGCCCGTG TCGCACGGCG TGATCAACAT GACGTCGACC
GACCACAACG GCTTCGACAC GCGTGCGCGC GTGATGGTGC AGATCGTCGA CGGCAAGTGG
AAGCTGCAGG CCGAGTAA
 
Protein sequence
MKMNRWMEVL LAAGLVCAAA TASAQVKIGV TLSATGPAAS LGIPEKNTIA LLPKEIAGKS 
VQYIVLDDAS DTSRAVQNVR KLIDEDHVDA IIGSSVTPNS LAMLDPVSQG KTPTISLAAS
AQIIAPMDTK RAWMFKVPQN DQLMADAIAG YMAKHGVKTI GFIGFADAYG DSWYNTFNAA
ATKNGLKVVS NERYNRTDAS VMGQVLKLLG SNPDAVLIAG SGTPAALPAK TLKERGYKGK
VYQTHGVANN DFLRVCGKDC EGEILPAGPV LVTDQLPDSN PVKKPALGYK AAYEKAYGAG
SLSTFGGHAW DAGLLLQRAI PDALKKGQPG TEAFREALRA SLESVKDLPV SHGVINMTST
DHNGFDTRAR VMVQIVDGKW KLQAE