| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_0084 |
|---|
| Symbol | |
|---|
| ID | 6175956 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010551 |
|---|
| Strand | + |
|---|
| Start bp | 92455 |
|---|
| End bp | 94140 |
|---|
| Gene Length | 1686 bp |
|---|
| Protein Length | 561 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641679819 |
|---|
| Product | glucose-methanol-choline oxidoreductase |
|---|
| Protein accession | YP_001806802 |
|---|
| Protein GI | 172059150 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGTACTC AACGTACGCT CGAGGGCGAA TTCGATTACG TGATCGTCGG CGCGGGCACC
GCGGGCTGCG TGCTCGCGAA CCGCCTGACC GAGGATCCCG AGATCCGCGT GCTGCTGCTC
GAGGCGGGCG GCAAGGACGA CTATCACTGG ATCCACATCC CGGTCGGCTA TCTGTACTGC
ATCGGCAATC CGCGCACCGA CTGGCTGTAC AAGACACAGC CCGAGGCGGC GCTCAACGGC
CGCGCGCTGT CGTATCCGCG CGGCCGCGTG CTCGGCGGCT GCTCGTCGAT CAACGGGATG
ATCTACATGC GCGGCCAGCG CGAGGATTAC GACAGCTGGG CGCAGGAAAC CGGCGACGCC
GGCTGGTCGT GGGACAGCGT GCTGCCGATC TTCAAGCGCA GCGAAGACCA CCACGCGGGC
GCGAGCGATG CGCACGGCAC GGGCGGCTAC TGGCGCGTCG AGAAGCAGCG GCTGCGCTGG
GAGATTCTCG AATCGTTCGC GCAGGCCGCG CAGCAGACGG GCATCCCGGC GACCGACGAT
TTCAACCGCG GCGACAACAC CGGCGTCGGC TATTTCGAAG TGAACCAGAA GCGCGGCGTG
CGATGGAATA CGTCGAAGGC GTTCCTGAGG CCCGCGATGA CGCGCCCGAA CCTGACCGTC
ATCACCGGCG CGCACGCGCA GCGCGTGATC TTCGACGGGC GGCGCGCGGT CGGCGTCGAG
TATCGCGGTG GCGGCACCGA CTACGTCGCG CGCGCGCGCG TCGAAGTGCT GCTGACTTCC
GGCGCGGTGA ATTCGCCGCA GCTGCTCGAA CTGTCCGGCA TCGGTGCGGG CGCGCGGCTG
CAGGCGCTCG GCATCGACGT CGTGCAGGAT CTGCCCGGCG TCGGCGAGAA CCTGCAGGAT
CATCTGCAAT TGCGGATGGC GTTTCGCGTC GATGGCGTGC GCACGCTCAA CACGCTGTCC
GCGCACTGGT GGGGCAAGCT GATGATCGGC GCCGAATATG CGCTGCTGCA GCGCGGGCCG
ATGTCGATGG CGCCGTCGCA GCTCGGCGCG TTCGCGAAGT CCGATCCGGA CGATCCCGCG
CTCACGCGCC CCGATCTCGA ATATCACGTG CAGCCGCTGT CCCTCGAACG TTTCGGCGAG
CCGTTGCACG GGTTCAACGC GTTTACGGCG TCCGTCTGCC ATCTGCGGCC GACCTCGCGC
GGCAGCGTGC ACATCGCGAG CCCCGATGCG GCCGTGGCAC CATCGATCGC GCCGAACTAC
CTGTCGACCG ACCACGATCG TCATGTCGCC GCGAACGCGC TGCGTCTCAC GCGCCGGATC
GCATCCGCGC CGGCGCTCGC GCGCTATCGT CCGCAGGAGA TCCTGCCGGG TACGCAATAT
CGGACCGAAG CCGAGCTGAT CGATGCGGCG GGCGCGATCG GCACCACGAT CTTCCATCCG
GTCGGCACGT GCCGGATGGG GCGCGCGGAC GACGAACGGG CCGTCGTCGA CAGCCGGCTG
CGCGTGCGAG GCATCGCGGG GCTGCGGATC GTCGATGCAT CGGTGATGCC GTTCATCACG
TCGGGCAACA CGAATTCGCC GACGCTGATG ATCGCCGAGC GCGCGAGCGA CATGATCCGC
GCCGATCGGC GCGCGGCGCA CGAAACGACG CACGCGCGAA CGGAAGCGGT GGTGACGGCT
GCGTGA
|
|---|
| Protein sequence | MSTQRTLEGE FDYVIVGAGT AGCVLANRLT EDPEIRVLLL EAGGKDDYHW IHIPVGYLYC
IGNPRTDWLY KTQPEAALNG RALSYPRGRV LGGCSSINGM IYMRGQREDY DSWAQETGDA
GWSWDSVLPI FKRSEDHHAG ASDAHGTGGY WRVEKQRLRW EILESFAQAA QQTGIPATDD
FNRGDNTGVG YFEVNQKRGV RWNTSKAFLR PAMTRPNLTV ITGAHAQRVI FDGRRAVGVE
YRGGGTDYVA RARVEVLLTS GAVNSPQLLE LSGIGAGARL QALGIDVVQD LPGVGENLQD
HLQLRMAFRV DGVRTLNTLS AHWWGKLMIG AEYALLQRGP MSMAPSQLGA FAKSDPDDPA
LTRPDLEYHV QPLSLERFGE PLHGFNAFTA SVCHLRPTSR GSVHIASPDA AVAPSIAPNY
LSTDHDRHVA ANALRLTRRI ASAPALARYR PQEILPGTQY RTEAELIDAA GAIGTTIFHP
VGTCRMGRAD DERAVVDSRL RVRGIAGLRI VDASVMPFIT SGNTNSPTLM IAERASDMIR
ADRRAAHETT HARTEAVVTA A
|
|---|
| |