| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_0062 |
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| Symbol | |
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| ID | 6176918 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010551 |
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| Strand | - |
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| Start bp | 68707 |
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| End bp | 71022 |
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| Gene Length | 2316 bp |
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| Protein Length | 771 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641679797 |
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| Product | general secretion pathway protein D |
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| Protein accession | YP_001806780 |
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| Protein GI | 172059128 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGGCGCG TCGCCACGAC CCTGATCGTC GCCGGCATCA TCGTCTCGCA AGCCGCCTAC
GCTCAGGTCA CGCTCAATTT CGTGAATGCG GATATCGACC AGGTCGCGAA GGCGATCGGC
GCCGCAACCG GCAAGACCAT CATCGTCGAT CCCCGCGTGA AGGGGCAGCT CAACCTCGTA
TCGGAACGGT CCGTGCCGGA AGACCAGGCG CTGAAGACGC TGCAGTCGGC GCTGCGCATG
CAGGGCTTCG CGCTCGTGCA GGATCACGGC GTGCTGAAGG TCGTGCCCGA GGCCGACGCG
AAGCTGCAGG GCGTGCCGAC CTATATCGGC AATGCGCCGC GCGCGCGCGG CGACCAGGTC
ATCACGCAGG TGTTCGAGCT GCACAACGAA TCGGCGAACA ACCTGCTGCC GGTGCTGCGG
CCGCTGATCT CGCCGAACAA CACGGTCACC GCCTACCCGG CGAACAACAC GATCGTCGTC
ACCGATTACG CTGACAACGT GCGCCGCATC GCGCAGATCA TCGCTGGCGT CGACAGCGCC
GCGGGCGCGC AGGTGCAGGT CATACCGCTG CGTAACGCGA ACGCGATCGA CCTCGCCGCG
CAGCTGCAGA AGATGCTCGA CCCCGGCGCG ATCGGCAATA GCGACGCGAC GCTGAAGGTG
TCGGTCACGG CCGATCCGCG CACCAATTCG CTGATGCTGC GCGCATCGAG CGCGTCGCGC
CTCGCGGCGG CGAAGCGCAT CGTGCAGCAG CTCGACGCGC CGAGCGGCGT GCCCGGCAAC
ATGCACGTCG TGCCGTTGCG CAATGCCGAT GCGGTGAAGC TCGCGAAGAC GCTGCGCGGG
ATGCTCGGCA AGGGCGGCAA CGACAGCGGC TCGTCGGCGT CGTCCAACGA TGCGAACAGC
TTCAACCAGA GCGGCGGCTC GTCGGCGAGC GGCAACTTCT CGACCGGCAC GTCCGGCACC
CCGCCGCTGC CGTCCGGCGG CCTCGGCGGC GGTTCGTCTT CGTCGTCGGC CTACGGCAGC
GGTGCGTCGG GCAGCGGTGG CGTCGGCAGC GGCGGCCTGC TCGGCGGCGA CAAGGACAAG
AGCGACGAAA ACCAGCCGGG CGGGATGATC CAGGCCGATG CGGCCACCAA TTCGCTGATC
ATCACCGCGT CCGATCCGGT CTACCGGAAC CTGCGCTCGG TGATCGACCA GCTCGACGCG
CGGCGTGCGC AGGTCTATAT CGAGGCGCTG ATCGTCGAGC TGAACTCGAC GACGCAGGGC
AACCTCGGCA TCCAGTGGCA GGTGGCGAGC GGCCAGTTCC TCGGCGGCAC GAACCTGGCA
CCGACGGCCG GAACCGGCCT GGGCAACAGC ATCGTCAACC TGACGAGCGG CGGCACGGCC
GCCACCACCG GGCTGGCCGC CAATCTCGCG GGCCTGAGCC AGGGCCTCAA CATCGGCTGG
CTGCACAACA TGTTCGGCGT GCAGGGGCTC GGCGCGCTGC TCCAGTATTT CGCGGGCGTG
AGCGACGCGA ACGTGCTGTC GACGCCGAAC CTGATCACGC TCGACAACGA GGAAGCGAAG
ATCGTCGTCG GCCAGAACGT GCCGATCGCG ACCGGTTCGT ACTCGAACCT GACGAGCGGC
ACGACGAGCA ACGCGTTCAA TACCTACGAC CGTCGCGACG TCGGCCTGAC GCTGCACGTG
AAGCCGCAGA TCACCGACGG CGGGATCCTG AAGCTGCAGC TCTACACGGA GGATTCGGCG
GTCGTCAGCG GCACCACCAA CGCGCAGACC GGCCCGACCT TCACGAAGCG CTCGATCCAG
TCGACGATCC TCGCGGACAA CGGCGAGATC ATCGTGCTCG GCGGCTTGAT GCAGGACAAC
TACCAGGTAT CGAACAGCAA GGTGCCGCTG CTCGGCGACA TCCCGTGGAT CGGCCAGCTG
TTCCGTTCGG AATCGAAGCA GCGCCAGAAG ACCAACCTGA TGGTGTTCCT GCGCCCGGTG
ATCATCTCCG ATCGCAGCAC CGCGCAGGAA GTCACGGCCA ACCGCTACGA CTACATCCAG
GGCGTGACCG GCGCGTACAA GTCGGACAAC AACGTGATCC GCGACAAGGA CGATCCGGTC
GTCCCGCCGA TGCCGCTCGG CCCGAGCCAG GGCGGCACGC CCGCCGGGAA CCTGTTCGAC
CTCGACAAGA TGCGTCGCCA GCAGCTGCAG CGCCAGGTCG CGCCCGTTCC CGCGCCGGCC
CCGGTGCCCG CGCCCGAACC GGTGCAGCCG CAGAGCGTGC CGCAGCAGTC GGTGCCGCAG
CAACCGCTGA CCGCCACGCC GGGAGCCTCG CAGTGA
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| Protein sequence | MRRVATTLIV AGIIVSQAAY AQVTLNFVNA DIDQVAKAIG AATGKTIIVD PRVKGQLNLV
SERSVPEDQA LKTLQSALRM QGFALVQDHG VLKVVPEADA KLQGVPTYIG NAPRARGDQV
ITQVFELHNE SANNLLPVLR PLISPNNTVT AYPANNTIVV TDYADNVRRI AQIIAGVDSA
AGAQVQVIPL RNANAIDLAA QLQKMLDPGA IGNSDATLKV SVTADPRTNS LMLRASSASR
LAAAKRIVQQ LDAPSGVPGN MHVVPLRNAD AVKLAKTLRG MLGKGGNDSG SSASSNDANS
FNQSGGSSAS GNFSTGTSGT PPLPSGGLGG GSSSSSAYGS GASGSGGVGS GGLLGGDKDK
SDENQPGGMI QADAATNSLI ITASDPVYRN LRSVIDQLDA RRAQVYIEAL IVELNSTTQG
NLGIQWQVAS GQFLGGTNLA PTAGTGLGNS IVNLTSGGTA ATTGLAANLA GLSQGLNIGW
LHNMFGVQGL GALLQYFAGV SDANVLSTPN LITLDNEEAK IVVGQNVPIA TGSYSNLTSG
TTSNAFNTYD RRDVGLTLHV KPQITDGGIL KLQLYTEDSA VVSGTTNAQT GPTFTKRSIQ
STILADNGEI IVLGGLMQDN YQVSNSKVPL LGDIPWIGQL FRSESKQRQK TNLMVFLRPV
IISDRSTAQE VTANRYDYIQ GVTGAYKSDN NVIRDKDDPV VPPMPLGPSQ GGTPAGNLFD
LDKMRRQQLQ RQVAPVPAPA PVPAPEPVQP QSVPQQSVPQ QPLTATPGAS Q
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