Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_0055 |
Symbol | |
ID | 6176954 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010551 |
Strand | - |
Start bp | 63240 |
End bp | 63914 |
Gene Length | 675 bp |
Protein Length | 224 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 641679790 |
Product | putative general secretion pathway protein J |
Protein accession | YP_001806773 |
Protein GI | 172059121 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4795] Type II secretory pathway, component PulJ |
TIGRFAM ID | [TIGR01711] general secretion pathway protein J [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.0954003 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 37 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGGCGCC GTCCCATGCG TTTCGCCGGC TCGCGCCGCG TGCGCGGCTT CACGCTGATC GAACTGATGA TCGCGATCGC GATCCTCGCG GTGGTCGCGA TCCTCGCGTG GCGCGGGCTC GACCAGATCA TGCGCGGCCG CGACAAGGTC GCGTCCGCGA TGGAAGACGA GCGCGTGTTC GCGCAGATGT TCGACCAGAT GCGCATCGAC GCGCGGCTCG CCGCGACCGA CGACGAAGCC GGCCAGCCGG CGATCGGCGT CGCCGGCAAT ACGCTGCAGA TCGTCCGCAC GCTCGACTTG GCCGGCGCCG CGCCGCGGCT GCAGGTGGTC CGCTACCGGA TCGCCGGCGG GCGCGTCGTG CGCTATGCAT CGCCGCCGCT CGCCGATGCG AACCGCTTGC GCGACGTGCT GAAGGACAGC GGCGTCGACG GCTGGAACTG GGTCGCGCTG ATGGGCGGCG TCGGTGCGAT CGACGCGAAG CTGTACGTGC CGCGCGTCGG CTGGACCACC AACCTGCAGA CGGCCAATGA CGCGCTGTCG CAGAACAACG ATGCGCTGAA GGTGCCGCAG ATCGGCAACG CGCCGCCGAC ACGCGCGGTG ACGGGGCTGC AGGTCAGCAT CGGCGCGACG TCGCTGCGCG TGCCCGTCAC GCGCATCTTC CTCGTCGGGG AATGA
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Protein sequence | MRRRPMRFAG SRRVRGFTLI ELMIAIAILA VVAILAWRGL DQIMRGRDKV ASAMEDERVF AQMFDQMRID ARLAATDDEA GQPAIGVAGN TLQIVRTLDL AGAAPRLQVV RYRIAGGRVV RYASPPLADA NRLRDVLKDS GVDGWNWVAL MGGVGAIDAK LYVPRVGWTT NLQTANDALS QNNDALKVPQ IGNAPPTRAV TGLQVSIGAT SLRVPVTRIF LVGE
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