| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_0049 |
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| Symbol | |
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| ID | 6176079 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010551 |
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| Strand | + |
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| Start bp | 57302 |
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| End bp | 58831 |
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| Gene Length | 1530 bp |
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| Protein Length | 509 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 641679784 |
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| Product | RND efflux system outer membrane lipoprotein |
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| Protein accession | YP_001806767 |
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| Protein GI | 172059115 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.963186 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGTACG CCCCCCTCCC GCGCGCCTTT CGCCCGCTGA GCGCCGCCGT CGCCGTTGCG
ACGGCCGTGC TGCTCGCCGG CTGCGCCGTC GGGCCCGACT ATCACCGGCC CGACACGTCG
ATCCCCGCCG CCTTCAAGGA AGCGCCAGCC GGCTGGAAGG TCGCGCAGCC GGCCGACCGG
GCCGACCGCG GCCCGTGGTG GACCGTCTAC AACGATCCGC AGCTCGACGC GCTGATCGGC
AAGCTCAACG CATCGAACCA GACCATCGCG CAATCGGCCG CCGCGTACCG GCAGGCCCGC
GCGCTCGTCG CCGAAGCGCG CGCCGCATAT TTCCCGACCG TCGGGCTGAC CGCGTCGGGC
TCGCGCGCAC GCTCGGGGCG CACGTCCACG TCGTCGAGCG CGTCGGGCTT CGGCAGCAGT
TCGTCGATCA GCAACAGCTA CAGCGTCGGC CTCGATGCGA GCTGGGAGCC CGACCTGTGG
GGCAAGGTGA GCCGCAGCGT CAGCGCGCAG CGCGCCGGCG AAGCGGCCGC CGCGGCCGAT
CTCGCGAATG CGCGGCTGTC GCAGCAGGCG CTGCTCGCGC AGACCTACTT CCAGCTGCGC
ACGTCCGATG CGCTGCAGAG GCTGCTCGAT GACACCGTGA AGTCGTACGG CGACTCGCTG
AAGCTCACGC AGAACCAGTA CGCGCAGGGC GTCGCCGCGC GCGCGGACGT GATCCAGGCG
CAGACGCAGC TGCAGAGCGC GCAGGCCGCG GCGATCGACA ACGGCGTCGC GCGCGCGCAG
TACGAGCATG CGATCGCGAC GCTGATCGGC GAGCCGGCAT CGACGTTCTC GCTGCCGCCG
AACCCGCTCA CCGCGCAACC GCCGATCACG CCGGTCGACG TGCCGTCCGC GCTGCTCGAG
CGCCGGCCCG ACATCGCGGC GGCAGAGCGC CGCGCGGCTT CCGCGAACGA GCAGATCGGC
GTGGCGATCG CCGCGTTCTT CCCGACGCTC ACGCTGTCGG CCACCGGCGG CTTCCAGAGC
TCGGTGTGGT CGCAACTGTT CACGCTGCCC GCGCGGTTCT GGACGGTCGG CCCGCAGCTC
GCGGCGACGC TGTTCGACGC CGGCCTGCGT GCCGCGCAGA CGGATGCCGC CCGCGCGACC
TACGACCAGG ACGTCGCCGC GTATCGTCTC GCGGTGCTCA CCGCGTTCCA GGACGTCGAG
GACAACCTCG CGTCGCAGCG CATCCTCGCG CAGGAAGTCG ACGTGCAGCG GCAGGCCGTC
GACAGCGCCG AGCACGCGCT CGCGATCGTC ACGAACCAGT ACAAGGCCGG CACGGTCGCC
TACCTGAACG TGCTGAGCGC GCAGACCACC GCGTTTACCG CGCAGCAGAA GCTCGCGACG
ATCGCCGGCC AGCGGATGGT GTCGTCGGTC GGGCTCGTGA AGGCGCTGGG CGGCGGCTGG
GATGCGTCGG ACATGGCGCG CGAAACGGGC GACACGGCGG CGCCGGTGCC GGCGAGCAGC
GCGGCGACCA CACCGGTCGC ACTGAAATGA
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| Protein sequence | MPYAPLPRAF RPLSAAVAVA TAVLLAGCAV GPDYHRPDTS IPAAFKEAPA GWKVAQPADR
ADRGPWWTVY NDPQLDALIG KLNASNQTIA QSAAAYRQAR ALVAEARAAY FPTVGLTASG
SRARSGRTST SSSASGFGSS SSISNSYSVG LDASWEPDLW GKVSRSVSAQ RAGEAAAAAD
LANARLSQQA LLAQTYFQLR TSDALQRLLD DTVKSYGDSL KLTQNQYAQG VAARADVIQA
QTQLQSAQAA AIDNGVARAQ YEHAIATLIG EPASTFSLPP NPLTAQPPIT PVDVPSALLE
RRPDIAAAER RAASANEQIG VAIAAFFPTL TLSATGGFQS SVWSQLFTLP ARFWTVGPQL
AATLFDAGLR AAQTDAARAT YDQDVAAYRL AVLTAFQDVE DNLASQRILA QEVDVQRQAV
DSAEHALAIV TNQYKAGTVA YLNVLSAQTT AFTAQQKLAT IAGQRMVSSV GLVKALGGGW
DASDMARETG DTAAPVPASS AATTPVALK
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