Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_0020 |
Symbol | |
ID | 6176553 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010551 |
Strand | - |
Start bp | 29322 |
End bp | 30203 |
Gene Length | 882 bp |
Protein Length | 293 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 641679755 |
Product | RNA polymerase sigma factor SigJ |
Protein accession | YP_001806738 |
Protein GI | 172059086 |
COG category | [K] Transcription |
COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.104667 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGAGCG TCGATCCGGC CACGGGCAAT GCCGAAGACC GGGCCGACGC AGCGGCGAGC TTCGACCCGC TGCGTCGCAC GCTGATTCGC GTCGCGTACC GGATGCTCGG TTCCGTCGCG GACGCCGAGG ACATCGTGCA GGAGGCGTTC ATCCGCTGGA TGGACGTCGA TCGCACCGAG GTGCGCGTGC CCGAGGCGTT CCTGCGCCGC ATGGTGATGC GCATGTGCCT CGATCAGTTG AAGTCCGCGC GGCACCAGCG CGAGACCTAT ATCGGCCCAT GGCTACCCGA GCCGGTCGTC GAGGAAGATG AACAGGAGGA CGTCACGCTG CCGCTGATGC TCGCGCTCGA ACGGCTGTCG CCGCTGGAGC GCGCGGCGTT TCTGCTGCAC GACGTGTTCG GCCTCGAGTT CGACGAGATC GCGACCACGA TTCAGCGCGA CCCGGCCGCA TGCCGGCAGC TCGCCGCGCG CGCACGCACG CATGTGCGCG AGGCGCGGCC GCGGTTTCAT GTCGAGAAGC AGCGCGGGAT CGAGCTGGCC GAGGCGTTCT TCGCGGCGTC CCGCAGCGGC GACATGCGTG CGCTCGGCGC GATGCTCGCC GAGGACGTGA GCCTGCATTC GGACGGCGGC GGCAAGCGCG CGGCCGCGGG CAAGCCGGTG TTTGGCTTCG AACGCGTGAT GAAGGTGCAC GAATACCTGG CCGAGTTGTT CGCCACGCAT GCGTCGAAAC TCGTGCGCGC GGGGTTCATC AACGGGCTGC CTGGGTTCGT CACGCTGGAG GCCGACGGCG AGCTGCAGAC GACCGCGCTC GACATCGACG ACGGGAAGAT CGTCGCGATC TATGTCGTGC GCAATCCTGA CAAATTGAAG CATCTGCATT GA
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Protein sequence | MTSVDPATGN AEDRADAAAS FDPLRRTLIR VAYRMLGSVA DAEDIVQEAF IRWMDVDRTE VRVPEAFLRR MVMRMCLDQL KSARHQRETY IGPWLPEPVV EEDEQEDVTL PLMLALERLS PLERAAFLLH DVFGLEFDEI ATTIQRDPAA CRQLAARART HVREARPRFH VEKQRGIELA EAFFAASRSG DMRALGAMLA EDVSLHSDGG GKRAAAGKPV FGFERVMKVH EYLAELFATH ASKLVRAGFI NGLPGFVTLE ADGELQTTAL DIDDGKIVAI YVVRNPDKLK HLH
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