Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_0016 |
Symbol | |
ID | 6176862 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010551 |
Strand | + |
Start bp | 25840 |
End bp | 26358 |
Gene Length | 519 bp |
Protein Length | 172 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 641679750 |
Product | ECF subfamily RNA polymerase sigma-24 factor |
Protein accession | YP_001806734 |
Protein GI | 172059082 |
COG category | [K] Transcription |
COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.000257028 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCTTCAA ACGCCCCCGA CGACGACGCG TTGCGCGAAC TCATCCCCAG GCTGCGACGC TTCGCGCTCT GGCTGGCGCG CGACGTTCAT GCGGCAGACG ATCTCGTCCA GTCGACGCTC GAGCGCGCGC TGTCGCGCTG GACGAGCCGC CGCGACGACG CGTCGCTGCG CAGCTGGCTC TTCACGATCC TTTACCGACA GTTTCTCGAC GGCAAGCGCA GCGCGAAACG TTACGCGTGG ATGCTCGGCC GCATTCGCGA CGACGACGAG CTGCACTGGC CGTCCGCCGA ACGCGAGGTG GCCGCGCGTG CGACGCTCGA AGCGTTCGGC CGCCTGTCCG ACGAGCAGCG CAGCCTGCTG CTGCTCGTCG CGGTCGAGGG CTTCACGTAT CAGGAAGTCG CCGAGCTGCT CGACGTGCCC ATCGGCACCG TGATGTCGCG ACTCTCCCGC GCGCGTCAGG CGCTGCGCCA GCTCAGCGAC GGCGAGCTTC CCGCTCCTTC TCTCCGGTTG ATGAAATGA
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Protein sequence | MPSNAPDDDA LRELIPRLRR FALWLARDVH AADDLVQSTL ERALSRWTSR RDDASLRSWL FTILYRQFLD GKRSAKRYAW MLGRIRDDDE LHWPSAEREV AARATLEAFG RLSDEQRSLL LLVAVEGFTY QEVAELLDVP IGTVMSRLSR ARQALRQLSD GELPAPSLRL MK
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