Gene BamMC406_0002 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_0002 
Symbol 
ID6176574 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010551 
Strand
Start bp2048 
End bp3154 
Gene Length1107 bp 
Protein Length368 aa 
Translation table11 
GC content63% 
IMG OID641679734 
ProductDNA polymerase III subunit beta 
Protein accessionYP_001806721 
Protein GI172059069 
COG category[L] Replication, recombination and repair 
COG ID[COG0592] DNA polymerase sliding clamp subunit (PCNA homolog) 
TIGRFAM ID[TIGR00663] DNA polymerase III, beta subunit 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.011531 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.38726 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAACTGG TCAAGACCGA ACGAGACACA CTCCTCAGGC CGCTGCAAAC GGTCAGCGGC 
ATCGTCGAAC GCCGCCATAC GTTGCCGATC CTCGCCAACC TGCTGATCAC CAAGAACGGC
CCGGACGTTT CTTTCCTGTC GACCGACCTG GAGCTGCAGA TCACCACGCG CGCCGATTTC
GGCGTCGGCG GCGACCAGGT GGCCACCACC GTCGCGGCCC GCAAGCTGCT CGACATCCTG
CGCGCGATGC CTGACGGCCA GGTCACGCTG TCGCTCGCCG ACAAGCGCCT CACCGTTCAA
TCGGGCAAGA GCCGCTTCGC ACTGCAGACG CTCGCGGCCG ACGAGTTCCC GACCGTCGCG
CAGGCGAAGG ATTTCGGCGC GACGCTGACC GTCCCGCAGA AGTCGTTCCG CCAGTTACTC
GGCATGGTGC ACTTCGCGAT GGCGCAGCAG GACATCCGCT ACTACCTGAA CGGCATGCTG
CTCGTCGTCG ACGGCGACCA GCTGATGGCC GTGGCCACCG ACGGCCACCG CCTCGCGTTC
TCGTCGATGA AGCTCGAAGG CGGCACCTTC GGCCGCCAGG AAGTGATCGT GCCGCGCAAG
ACGATTCTCG AGCTGCAGCG CCTGCTCGAA GATATCGACG ACACCGTCAC CATCGACATC
GCGCAAACCC AGGCCAAGTT CACGTTCGGC CAGGTCGAGC TCGTGTCGAA GCTGGTCGAG
GGCAAGTTCC CCGACTTCCA GCGCGTGATC CCGAAGGCGC ACAAGAACAC GTTCGAGATC
GGCCGTGAAG AGCTGCAGCG TTCGCTGCAA CGCGCGGCGA TTTTGACGTC CGACAAATTC
AAGGGCGTGC GCTGCATCAT CGCGCCGGGC CAGCTGAAGA TCATGTCGAC CAACGCCGAT
CAGGAAGAGG CGCAGGAAGA ACTGGAAATC GCGTACCAGG GCGATACCGT CGACATCGGC
TTCAACGTCA CGTATCTGCT CGACGTGCTC GCGAACCTGA AGGTCGACAC CGTACAGGTG
AGCCTCGGCG ACGCCAGCTC GAGCGCGCTG ATCACCGTGC CCGAGAACGA AGAATTCAAG
TATGTCGTGA TGCCGATGCG CATCTGA
 
Protein sequence
MQLVKTERDT LLRPLQTVSG IVERRHTLPI LANLLITKNG PDVSFLSTDL ELQITTRADF 
GVGGDQVATT VAARKLLDIL RAMPDGQVTL SLADKRLTVQ SGKSRFALQT LAADEFPTVA
QAKDFGATLT VPQKSFRQLL GMVHFAMAQQ DIRYYLNGML LVVDGDQLMA VATDGHRLAF
SSMKLEGGTF GRQEVIVPRK TILELQRLLE DIDDTVTIDI AQTQAKFTFG QVELVSKLVE
GKFPDFQRVI PKAHKNTFEI GREELQRSLQ RAAILTSDKF KGVRCIIAPG QLKIMSTNAD
QEEAQEELEI AYQGDTVDIG FNVTYLLDVL ANLKVDTVQV SLGDASSSAL ITVPENEEFK
YVVMPMRI