| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_1783 |
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| Symbol | trmE |
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| ID | 6183739 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010531 |
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| Strand | - |
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| Start bp | 1556573 |
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| End bp | 1557937 |
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| Gene Length | 1365 bp |
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| Protein Length | 454 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 641672280 |
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| Product | tRNA modification GTPase TrmE |
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| Protein accession | YP_001798449 |
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| Protein GI | 171464336 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0486] Predicted GTPase |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.028326 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 61 |
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| Fosmid unclonability p-value | 0.377376 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGATGACGA GAAAATTGCC CATCATTGCT ATTGCCACCG CGCCAGGCAA GGCTGGCGTA
GGGGTTGTGC GCATTAGCGG TCAAAATTTA ATCGACCTCA CAACGGCGCT TTTTCAAAAA
AAACTTTCTC CAAGACAAGC CAATCTATTA ACGCTGTCCG ATGAACATGG TCAAACCATT
GACCAGCTGA TTGCCATTTA CTTTGCTGGT CCAGCTTCGT TCACAGGTGA AGACGTTTTA
GAGTTGCAGT GTCATGGGGG GCCACAGCTG CTTGAGTTGG TAATGAAGCG CTGTCTCGAG
TTGGGTAAAA ACGAGGGCCT TGTCATTGCT GAGCCTGGTG AATTTACCTT GCGCGCATAT
TTAAATAACA AGATTGATTT AGCGCAGGCA GAGGCAATTG CCGATCTAAT TGACGCACAG
AGCGAGGCCG CTGTTCGCGG CGCAGCATGT TCTTTGCAAG GTGCTTTTTC TGATGACATC
AATAATTTGA TTGAAGAAAT TACGCAGCTC AGAATCTTGG TTGAGTCGAC TTTGGATTTT
CCCGAAGAAG AAATTGAGTT TCTGGAAAAT GCTCAAGCGC GTCAGCGGCT TGTTACTGTC
AAAGAAAAAT TGCATACTTT GCGTGCTGGT GCGAAGCAGG GAAAAATTTT GCGTGATGGC
GTTCAGTTGG TTTTGGCTGG CGCTCCCAAC GTTGGAAAAA GCTCCCTTAT AAATCGCTTG
GTGGGTGAAG AGGTGGCAAT CGTAACGCCC ATTGCAGGAA CAACCCGTGA TCGGGTGAGG
GAAAGCATCA CCATTGATGG TGTACCGATG CACATCATGG ATACCGCTGG CTTGCGAGAG
ACGGCGGACT TGGTTGAGGC AAAGGGGATT GAAAGGTCTT GGGATTCCAT CCGCTTAGCG
GATTTGGTTA TTTTCTTAAC CGATGCCCAA TCGGGCGCGC AAAAAGATGA CCTAAAAACC
CAGATTTTGA AAGAATTGCC CTCCAAATGT GCCGTGCTTG AGGTTGTTAA CAAGGCTGAT
TTACTCTCAG ACCATTCGAA ATCGCCGAGT ACAGGAGCCT TGCTGATTTC GGCTAAAACA
GGAGCGGGGA TTGAGTTGCT CAAGCAAAAA ATCTTAGCCC TTGTGGGTTG GAGCGGACCT
CAAGAGGGTG CTATCTTGGC TAGAAGAAGG CACTTAGACT GCATTGAGCG GGCAGCCGAA
CATATTGAAA GATCAGAGTA TTTCGCAGCA AATGGCAACA ATTCGCTTGA ATTATTTGCA
GAAGAGCTAT CGTTAGCGCA AAAACACCTT GGTGAAATCA CCGGAAAGCT TCTCCCAGAC
GACCTTTTAG GAAAGATCTT CAGCCAGTTC TGTATTGGTA AATAA
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| Protein sequence | MMTRKLPIIA IATAPGKAGV GVVRISGQNL IDLTTALFQK KLSPRQANLL TLSDEHGQTI
DQLIAIYFAG PASFTGEDVL ELQCHGGPQL LELVMKRCLE LGKNEGLVIA EPGEFTLRAY
LNNKIDLAQA EAIADLIDAQ SEAAVRGAAC SLQGAFSDDI NNLIEEITQL RILVESTLDF
PEEEIEFLEN AQARQRLVTV KEKLHTLRAG AKQGKILRDG VQLVLAGAPN VGKSSLINRL
VGEEVAIVTP IAGTTRDRVR ESITIDGVPM HIMDTAGLRE TADLVEAKGI ERSWDSIRLA
DLVIFLTDAQ SGAQKDDLKT QILKELPSKC AVLEVVNKAD LLSDHSKSPS TGALLISAKT
GAGIELLKQK ILALVGWSGP QEGAILARRR HLDCIERAAE HIERSEYFAA NGNNSLELFA
EELSLAQKHL GEITGKLLPD DLLGKIFSQF CIGK
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