Gene Pnec_1778 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnec_1778 
Symboldef 
ID6184595 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. necessarius STIR1 
KingdomBacteria 
Replicon accessionNC_010531 
Strand
Start bp1549407 
End bp1549922 
Gene Length516 bp 
Protein Length171 aa 
Translation table11 
GC content41% 
IMG OID641672276 
Productpeptide deformylase 
Protein accessionYP_001798445 
Protein GI171464332 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0242] N-formylmethionyl-tRNA deformylase 
TIGRFAM ID[TIGR00079] peptide deformylase 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value0.818545 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones71 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTTTGT TAACCGTCCT TTGTTATCCA GACTCCCGCT TGCACAAGGT TGCAAAACCG 
GTAGCGCAGG TCGACGCTCG CATTAAAAAA ATTGTTGCCG ATATGGCAGA CACTATGTAT
GAAGCTCCCG GTGTTGGTTT GGCAGCAACG CAGGTAGACA TTCATGAGCG CATCGTAGTA
ATTGATGTAT CTGATGAGCA AAACGAATTA ATGGTTTTTA TTAATCCAGA AATTGTTTGG
ACAAGTTCCG AAACAAAATC ATGGCGCGAA GGTTGTTTAT CTGTCCCGGA GTTTTATGAT
GAAGTTGAAA GGCCAGCGGA AATTCGAGTT AAAGCTTTAG ACATAGATGG CAAAGAGTTC
GAAATTGAAG CTGACGGTTC GTTAGCAGTA TGTTTGCAGC ACGAGTTAGA TCATTTGCAA
GGAAAAGTAT TTGTTGAATA TTTATCGATA TTCAAAAGAA CTCGTATTTC TCAAAAAATG
AAGAAGCGCG CCAAAGAATT AATAGGTCAG CGCTAA
 
Protein sequence
MALLTVLCYP DSRLHKVAKP VAQVDARIKK IVADMADTMY EAPGVGLAAT QVDIHERIVV 
IDVSDEQNEL MVFINPEIVW TSSETKSWRE GCLSVPEFYD EVERPAEIRV KALDIDGKEF
EIEADGSLAV CLQHELDHLQ GKVFVEYLSI FKRTRISQKM KKRAKELIGQ R