| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_1776 |
|---|
| Symbol | |
|---|
| ID | 6183254 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010531 |
|---|
| Strand | - |
|---|
| Start bp | 1547531 |
|---|
| End bp | 1548397 |
|---|
| Gene Length | 867 bp |
|---|
| Protein Length | 288 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 641672274 |
|---|
| Product | M48 family peptidase |
|---|
| Protein accession | YP_001798443 |
|---|
| Protein GI | 171464330 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0501] Zn-dependent protease with chaperone function |
|---|
| TIGRFAM ID | [TIGR01297] cation diffusion facilitator family transporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 68 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTTAATT TTGCAAAGAC TGCTGTTTTG ATGGCAGCAA TTACTGCGCT GTTTATTGTG
GTTGGCGGCA TGTTGGGTGG TGAGCAAGGC ATGTTGATGG CTTTGCTTAT GGCTGTCGGT
ATGAATTTCT TTAGTTACTG GTTTTCTGAC ACTATGGTGT TGAAGATGAC CAATGCGCAG
CAAGTTGATG AAAGATCTGC GCCCCAGTTT TATGCGTTGG TGAGAGAGCT GTCTGAGAAG
GCAGGTTTGC CTATGCCTAA AGTATTTTTG ATTGATGAAG ACGCGCCAAA TGCTTTTGCA
ACAGGTCGCA ATCCAGATAA TGCCTCAGTT GCTGCGACAA TTGGCGTATT AAAAATTCTT
TCTAATCGTG AGTTGCGTGG CGTTATGGCG CATGAGCTTG CACACGTCCG TCATCGAGAC
ATTTTGATTT CAGCGGTTGC TGCAACAATG GCTGGCGCAA TTTCTGCGCT GGCAAATTTT
GCTATGTTCT TTGGCGGTCG CGACTCTGAA GGTAGGCCCA ACAATCCAAT AGCTAGCTTG
ATGGTGGCCA TATTAGCCCC AATAGCGGCA AGTTTGATTC AAATGAGTAT TTCACGCGCA
AGAGAATACG AAGCAGATCG TGGCGGCGCA GAAATAAGTT CCGACCCTGA GGCGCTCGCT
CATGCATTAG AAAAAATTCA TAACTATGCT CAAGGCACCC CGTTTCAGGC GGTTGAGCAA
CATCCAGAAA CCGCGCAGAT GATGATTCTG AATCCCCTTA CTGCAGGCGG TCTTGCGCAA
CTTTTCTCAA CCCACCCCCC TACAGAAGAG CGGGTGGCGC GCTTAATGCA TATGGCTAAA
AACGGGGAAT ACCCCGGAGC AAATTAA
|
|---|
| Protein sequence | MFNFAKTAVL MAAITALFIV VGGMLGGEQG MLMALLMAVG MNFFSYWFSD TMVLKMTNAQ
QVDERSAPQF YALVRELSEK AGLPMPKVFL IDEDAPNAFA TGRNPDNASV AATIGVLKIL
SNRELRGVMA HELAHVRHRD ILISAVAATM AGAISALANF AMFFGGRDSE GRPNNPIASL
MVAILAPIAA SLIQMSISRA REYEADRGGA EISSDPEALA HALEKIHNYA QGTPFQAVEQ
HPETAQMMIL NPLTAGGLAQ LFSTHPPTEE RVARLMHMAK NGEYPGAN
|
|---|
| |