Gene Pnec_1774 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnec_1774 
Symbol 
ID6183274 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. necessarius STIR1 
KingdomBacteria 
Replicon accessionNC_010531 
Strand- 
Start bp1545636 
End bp1546178 
Gene Length543 bp 
Protein Length180 aa 
Translation table11 
GC content44% 
IMG OID641672272 
Productputative periplasmic ligand-binding sensor protein 
Protein accessionYP_001798441 
Protein GI171464328 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones34 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones65 
Fosmid unclonability p-value0.585717 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCGTTGG GCATGCTCTC AACTACCGTA AGTGCAGAAG GAATCAAAAT CAAATCTTTT 
GAATTAGAGA GGGCGGATAG CGACTGGCTA TTGAGCGCTA CTTTTCAGAT TGAGCTTTCT 
CCTGGTCTAG AAGATGCAGT ACAAAAAGGC GTAGTTTTAT ATTTTCAAAC AGAATTTGAT 
TTAACGAGAT CACGTTGGTA TTGGTTCGAT GAAAAGTCTA CTCTCGTTCA GCGGCAAACC 
CGCCTGTCTT ATCAGCCCTT GACTCAGCAG TATCGAATTG CTTCTGAAGG CTTTACTTTC 
TCTGCTAAAT CCATGTATGA GGCCTTGCAA ACAGTTGGCA GTATTGGTGG CTGGCGTGTA 
ATTGAAGGGT CTCAACTAGA CTCTAGCAAG TCTTGCACAG CAAGCATGCG CATGAGCTTG 
GATCTTAGTA AGCTGCCTAA ACCATTCCAG GTGAATGCAT TGAATAATCG CGACTGGAAT 
ATTTCAAGCG ACTGGTATCG CTTTCCATTC TCTCCAAACG GCCCCAACCT GATTAAGCGA 
TGA
 
Protein sequence
MALGMLSTTV SAEGIKIKSF ELERADSDWL LSATFQIELS PGLEDAVQKG VVLYFQTEFD 
LTRSRWYWFD EKSTLVQRQT RLSYQPLTQQ YRIASEGFTF SAKSMYEALQ TVGSIGGWRV 
IEGSQLDSSK SCTASMRMSL DLSKLPKPFQ VNALNNRDWN ISSDWYRFPF SPNGPNLIKR