| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_1768 |
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| Symbol | |
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| ID | 6183459 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010531 |
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| Strand | - |
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| Start bp | 1540277 |
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| End bp | 1540990 |
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| Gene Length | 714 bp |
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| Protein Length | 237 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 641672266 |
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| Product | haloacid dehalogenase, type II |
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| Protein accession | YP_001798436 |
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| Protein GI | 171464323 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
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| TIGRFAM ID | [TIGR01428] 2-haloalkanoic acid dehalogenase, type II
[TIGR01493] Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 0.610342 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 71 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTATAAGC TCATAGCATT TGATGCGTAC GGCACGTTAT TTGATATGTA TTTCATGGGG
CAGTTGGCGG AAGAGCTCTT CCCCGGTTAT GGGCAGGCAT TTGCTTTGAT GTGGCGTGAT
CGACAGATTG AGTACACCCG GTTGGTGACA ATGAGTGATC CCAATCCAGC TGGCAGCAAG
CACTACCTAC CATTTTGGGA TTTAACAATT CGATCATTAC GCTATGTCTG TAAGAGGATG
GGTTTAAATC TAACCGCCGA ATACGAAAAG CGACTTATGG ATCAGTATGT AAGGCTTACT
GGCTTTGCTG ATAGTCTGAG TGTTCTTAAG GCAATTAAGG GAAAAGGCAT TTTTACTGCC
ATTTTGTCTA ACGGCAGTAG AGAGATACTA GCAACAGTAG TAGAAAGCAA TGGCCTAAAG
CCTTATTTGG ATCAAGTTGT TACTGTTGAA GACGTGCGTT TATTTAAAAC CGCTCCACAG
GCTTACGAGC TCTTATTAAA AGCATTTCCA GTTCAAAAAG AAGAAATCTT GTTTGTGTCG
AGCAACGCGT GGGATGCGCT GGCAGCAAAA TGGTGTGGCT TTGATGTATT TTGGGTCAAT
CGTCTTGGGC ATCCCTTTGA AGAGATTGGT GAAGAGAAAA GCGTGCTAAT AATTACTTCA
ATCATTGCTG CCGTTTTAAC TATTATTTTT TTATTAAGCT TTCATTTGCA GTGA
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| Protein sequence | MYKLIAFDAY GTLFDMYFMG QLAEELFPGY GQAFALMWRD RQIEYTRLVT MSDPNPAGSK
HYLPFWDLTI RSLRYVCKRM GLNLTAEYEK RLMDQYVRLT GFADSLSVLK AIKGKGIFTA
ILSNGSREIL ATVVESNGLK PYLDQVVTVE DVRLFKTAPQ AYELLLKAFP VQKEEILFVS
SNAWDALAAK WCGFDVFWVN RLGHPFEEIG EEKSVLIITS IIAAVLTIIF LLSFHLQ
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