| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_1753 |
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| Symbol | |
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| ID | 6183309 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010531 |
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| Strand | + |
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| Start bp | 1531274 |
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| End bp | 1532011 |
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| Gene Length | 738 bp |
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| Protein Length | 245 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 641672254 |
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| Product | RNA-binding S4 domain protein |
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| Protein accession | YP_001798424 |
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| Protein GI | 171464311 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 0.577127 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 83 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGAAGAAA AAGTACGCGT CTCAAAATTA CTCTCTGAGC TTGGCCTTTG TTCGCGTCGA
GAAGCAGACT CGTATATTGA GCAAGGCCTA GTCACCATCG ATGGTGAAGT GGTTAATGAA
TTAGGTGTCC GCGCCTATCG CCATCAAAAA ATTGAGTTGC AATCTGGTGC CAAGGCGCAA
CAAGCTTCTC GTATTACAGT GATCCTGAAT AAGCCTGTTG GTTACATCTC CCACTATGAC
GATGAACAAG AATATCAACC CGCAGCATCT CTCATTACAC CTGCAAATTA TTTTGCTAGC
CCGTTAGATA AAGGAAAAAG TCCTCGGTTT AATACCAAAG GGTTGGCTCC AGCGGGAAGA
TTAGACATTG ACTCCACTGG CATGCTGGTC CTCACTCAAG ATGGTCGCAT TGCTAAGTTA
TTGATTGGTG AAAATAGTCC AATCGAAAAA GAATATTTGG TACGCGTTGC AGGAAGGCTG
TCTTTCGAGG GTTTGGATCG TTTGCGACAC GGTCTATCCC TGGATGAAGT AGAACTTAAG
CCCGCACAGG TGAGCTGGCA AAACGAAGAA CAGCTTCGCT TTGTATTGCG CGAAGGACGT
AAACGCCAGA TCCGAAGAAT GTGCGAAATA GTTGGCCTCA AAGTGTTAGG TCTTAAGCGC
GTCAGAATGG GTCGCATCTC ACTAGGGTCG TTGCCCCCTG GTCAATGGCG CTATGTTGGT
CCGCATGAGC AGTTTTGA
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| Protein sequence | MEEKVRVSKL LSELGLCSRR EADSYIEQGL VTIDGEVVNE LGVRAYRHQK IELQSGAKAQ
QASRITVILN KPVGYISHYD DEQEYQPAAS LITPANYFAS PLDKGKSPRF NTKGLAPAGR
LDIDSTGMLV LTQDGRIAKL LIGENSPIEK EYLVRVAGRL SFEGLDRLRH GLSLDEVELK
PAQVSWQNEE QLRFVLREGR KRQIRRMCEI VGLKVLGLKR VRMGRISLGS LPPGQWRYVG
PHEQF
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