| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_1741 |
|---|
| Symbol | |
|---|
| ID | 6183467 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010531 |
|---|
| Strand | + |
|---|
| Start bp | 1523835 |
|---|
| End bp | 1525742 |
|---|
| Gene Length | 1908 bp |
|---|
| Protein Length | 635 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 641672244 |
|---|
| Product | penicillin-binding protein 2 |
|---|
| Protein accession | YP_001798414 |
|---|
| Protein GI | 171464301 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0768] Cell division protein FtsI/penicillin-binding protein 2 |
|---|
| TIGRFAM ID | [TIGR03423] penicillin-binding protein 2 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 81 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTTTCTT TTAAAAAGCC AGATCTCGAC TCATTTCAAG AGCGCACTCA TATTGCGACT
CTTTTTGTCA CCTTTTGTTT CTTGCTACTC ATTACTCGAC TTGTATGGCT ACAACTTGTT
AGTCACGGCA AATATGCTTT GTTGGCTGAA AGTAATCGCA TTGCTCTTGT TCCTGCGCCA
GCAAACCGCG GTTTATTAAT TGATCGCAAC GGCATAGTCA TTGGCAGAAA TTATTCAGCC
CTCACGCTTG ATGTGAATGC TGAAGAGGTA AAGGGCAATG TAGATCAATT AATCAATGAT
CTTTCTGAAA TTATTGCCAT TTCGCCCAGG GATCGCCGCA ATTTCAAGCG CTCCCTAGAG
GATTCCCGGA ATATGGGCAC CTTTCCGCTG CGATCGATGC TCAATGAGAC CGAAACAGCC
CGTTTTATGG CCAATCGCTA CCGCTTTCCT GGGGTGGAGA TTCGCGCCAG AAGCTTCCGA
GAGTACCCAT ACAACGAATT GGCCTCCCAC TTGATTGGCT ATATCGGCCG CGCTTCCCAG
AAAGATAAGG AACGCATGCA GGCTGAAATT GAAGGTGCTA AACCGGATGA TCCCGATGCT
TTACAAGCTT CTTTTTTACC TGGCATTCAG TACGTCGGAA AGATTGGTCT AGAGCAAAGC
TATGAAACTG TTCTACGCGG AGTGCCTGGA TACGATCAAG TAGAAATTAC TGCAGGCGGC
AAACCTGTCC GCACACTTTC TAGCTCGCCT TCAGTTCCCG GAAAGAATGT GGTTCTCTCG
GTTGATATCA AGCTGCAATA TTTAGTTGAG CAATTGTATG GCAACTTCCG CGGTGCATCT
GTAGCAATTG AACCTGAGAC AGGTGATGTG CTGGCATTTG TATCAAAACC TAACTTCAAT
CCGAATGATT TCGTTGAAGG CATTGATTCA GTTACCTGGA AAGAGCTTAA TGACTCGCCA
CAAAAACCGC TTTACAACCG CCCACTCAAA GGCATCTATC CGCCAGGCTC AACTTACAAG
CCTTTCATGG CACTGGCGGC TTTAGAAAAC AAAAAGCGTA CTCCATCACA AACCATCTCT
GACCCAGGCT ACTTTGACTT TGGCAATCAC ACTTTCCGCG ATGATAAAAA AGGCGGTCAT
GGCATCGTTG ATATGCAAAA GTCTATTGTG GAATCTTGTG ACACCTACTA CTACATGCTC
GCGCGTGACA TGGGTGTGAA TATGATGCAC GACTTTATGA AGCCTCTGGG CTTTGGCCAA
ATTACGGGCA TTGACTTACA AGGCGAAGCA AGGGGTGTTC TGCCGTCTGC TGAGTGGAAG
AAAAATACTT TCAAAAAGCC AGAGCAACAA AAATGGTACG AAGGTGAAAC TATCTCTCTC
GGAATTGGTC AAGGCTATAA CGCCTTTACA ATTTTGCAAT TGGCACACGC CATGGCAAAC
GTTGCTAACA ATGGGATTGT CATGAAACCT CATTTGATTA AAGCCATTGA AGACCCTTTT
ACCCGCAACA GAGTGCTTAC CACACCAAAA GAAAGCTATC GAATTGACCT AAATGCGGAC
AATATCGAAG TCATCAAGAA GGCGATGGTC GAAGTAAACA ATTCTGGCAC ATCAGCAGCA
GCATTCAAGG GAGCAGGGTA TCAAGTTGGC GGCAAGACCG GCACCGCACA AGTATTTAGC
TTGAACTCCA AAAAATATAA GCACGGGTCC ACCGCAGAAT TTCTGCGTGA CCATGCCTTG
TATATCGCTT TTGCACCGGC AGATAAACCA ACGATTGTGA TTGCAATGGT TGTTGAGAAC
GCAGGCTTCG GTGCGCAATA TGCTGCGCCA ATTGCCCGCA AAGCATTGGA CTACTACATT
GAGGGCAAGT GGCCTAAGGA GATCCCTGAG TGGAAAAGAG CCCCTTAA
|
|---|
| Protein sequence | MVSFKKPDLD SFQERTHIAT LFVTFCFLLL ITRLVWLQLV SHGKYALLAE SNRIALVPAP
ANRGLLIDRN GIVIGRNYSA LTLDVNAEEV KGNVDQLIND LSEIIAISPR DRRNFKRSLE
DSRNMGTFPL RSMLNETETA RFMANRYRFP GVEIRARSFR EYPYNELASH LIGYIGRASQ
KDKERMQAEI EGAKPDDPDA LQASFLPGIQ YVGKIGLEQS YETVLRGVPG YDQVEITAGG
KPVRTLSSSP SVPGKNVVLS VDIKLQYLVE QLYGNFRGAS VAIEPETGDV LAFVSKPNFN
PNDFVEGIDS VTWKELNDSP QKPLYNRPLK GIYPPGSTYK PFMALAALEN KKRTPSQTIS
DPGYFDFGNH TFRDDKKGGH GIVDMQKSIV ESCDTYYYML ARDMGVNMMH DFMKPLGFGQ
ITGIDLQGEA RGVLPSAEWK KNTFKKPEQQ KWYEGETISL GIGQGYNAFT ILQLAHAMAN
VANNGIVMKP HLIKAIEDPF TRNRVLTTPK ESYRIDLNAD NIEVIKKAMV EVNNSGTSAA
AFKGAGYQVG GKTGTAQVFS LNSKKYKHGS TAEFLRDHAL YIAFAPADKP TIVIAMVVEN
AGFGAQYAAP IARKALDYYI EGKWPKEIPE WKRAP
|
|---|
| |