| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_1715 |
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| Symbol | |
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| ID | 6183650 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010531 |
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| Strand | - |
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| Start bp | 1499184 |
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| End bp | 1501142 |
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| Gene Length | 1959 bp |
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| Protein Length | 652 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641672218 |
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| Product | Lytic transglycosylase catalytic |
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| Protein accession | YP_001798388 |
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| Protein GI | 171464275 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.728382 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 83 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGTTCG CAATATTCAC TAGTAAGCAC CTTTTGATGG CCAAGATTCT GATCTTGGGC
CTAGTACTTG GCATGTCCAG TAGCTTTGCA GAAAAACTAA AAAAACCAAG CCTGCCTAAG
TCATACGAGA GCAAAGCTGC TCCTGTGGAA ATTACTGATA CCGATCGATT GTTTATTGAT
TTGCGTGAAG CAGCAAAAAA GAATGATGTA TTTCGTACTC AACAACTCTC ATCTAGTCTA
ACAAACTACC CCTTTGATGA TTATGTAGCC TATTTCCGCA TCAAGCCACA ATTGTTTGAT
AGTGCTGGTG GTGCCCGTAA TGATTACAGT GCAGATGCTC AAGTTGTGGC GTTCTTGAAT
CAATACCAAG GTACAGCATT GGCTGATCGT ATGCGAAATG ATTGGCTTTT AGTTTTGGGT
AAACACAAGG ACTGGACGCG CTTTGATGTC GAGTATGCCA AGTTTGTGTT GGATGACGAC
ACCCAAGTGA AGTGCTATTC CTTGTTATCT AAGTTATCGC AGGGCGAGAA CCCTACTAAG
TTAGCAATTG ATTCTCGCTC GGTGCTATTG GACCCAGGTT ACTTTGGGCA GGCCTGCCAG
GAGCTGGTGC CATCTCTGGT TGCAGTTGGC GGAATGTCTC CTAGCGAAGC AAAAGCAATT
GGGCGCGCTG CAAGCGAAAG AGGTTTTGAC ACTATGGCCC GTCGTCTCGG CGGCGAAGAC
CCAATAGCAG ATATTGTGAA GGCCGCTAAA ACTGATCCAG TTAATGCCTA TCGTGATTTT
TCTCAAAGTG CGTCGCGCTA CAGTAAAGAG AATCAAGCGG TTGCATGGGG TGTGATCGGA
CAATTTTTAG CTAAGAAATT AGATCCCAAC GCAGATGATG CCTATCGATT GCAGCAGGAG
CTTGGATACA ACGAATTACT TTCTGTTGAG TCGCAAGAGT GGAAAGTGCG TGCTGGTTTG
CGCGCTAAAG ATTGGGTGCT GGTGAAGAAT GCGATTGATA GCATGAATCC GGCTGTGCGC
GCCGAAGACC CTGCATGGAC TTACTGGTAT GGTCGCGCAT TAAAAGCGGA GGGCCAGGAT
GCTAAAGCTA AAGAAAGCTT TGAATTAATT GCTGATCAAT ACAACTTTTA TGGTCAGCTT
GCTCGTGAAG AGTTAGGCAA GTCTAATCAT GCTCCTGCTA AAACAAAAGT GACTGAGCAA
GAGATTGATG CGATGGCTAG CCGTAAGGGC TTTGTTCGTG GCGAGCGCTT ATATGCCATG
AACCTGCGTT TTGAAGGTAA TCGCGAGTGG AATTGGGAAC TGCGCAACAT GACTGACAAG
CAGTTGTTAG CTGCGGCTGA GTATGCCAAG CGTATCAATC TTTATGATCG TGTTGTCAAT
ACTGCCGATC GTACAAAGCA GGAGCATGAC TTTAGTTTGC GTTACCCAAC GCCGTTTAAA
GAAGAGTTGT CTCCAATTGC GCGTCAAATT GATTTGAATC TAGCTTGGGC ATATGGCTTG
ATTCGTCAAG AGTCGCGCTT CATCATGAAT GCCGCATCTT CAGTGGGTGC ATCTGGATTG
ATGCAGGTGA TGCCCAATAC AGCAAAGTAT GTAGCCAAGA AAATTGGCAT GGCAAATTAC
ACCAATGACA AGCTGAGCGA CACCAATACT AACCTGACTT TAGGTAGTAA TTACCTCAAT
ATGGTTTTAG TTGATCTCGA TGACTCCTGG GTCTTGGCGT CTGCAGCCTA TAACGCTGGC
CCTTCACGCT CAAAAGCTTG GCGTGAAAAG CTTTCTGGTC CAACTGAAGG CGCTATTTTT
GCTGAAACTA TTCCGCTTAT AGAGACGCGC GTGTATGTGA AGAACGTACT CTCTAATGCG
AATTACTATT CTTCTGTAAT GAATGGTCAG ACACAATCCT TAAAGCAACG ATTGGGTGTG
ATTACGCCAA AGGCTGCAAC TCAATCTGAG CTTCCATAA
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| Protein sequence | MKFAIFTSKH LLMAKILILG LVLGMSSSFA EKLKKPSLPK SYESKAAPVE ITDTDRLFID
LREAAKKNDV FRTQQLSSSL TNYPFDDYVA YFRIKPQLFD SAGGARNDYS ADAQVVAFLN
QYQGTALADR MRNDWLLVLG KHKDWTRFDV EYAKFVLDDD TQVKCYSLLS KLSQGENPTK
LAIDSRSVLL DPGYFGQACQ ELVPSLVAVG GMSPSEAKAI GRAASERGFD TMARRLGGED
PIADIVKAAK TDPVNAYRDF SQSASRYSKE NQAVAWGVIG QFLAKKLDPN ADDAYRLQQE
LGYNELLSVE SQEWKVRAGL RAKDWVLVKN AIDSMNPAVR AEDPAWTYWY GRALKAEGQD
AKAKESFELI ADQYNFYGQL AREELGKSNH APAKTKVTEQ EIDAMASRKG FVRGERLYAM
NLRFEGNREW NWELRNMTDK QLLAAAEYAK RINLYDRVVN TADRTKQEHD FSLRYPTPFK
EELSPIARQI DLNLAWAYGL IRQESRFIMN AASSVGASGL MQVMPNTAKY VAKKIGMANY
TNDKLSDTNT NLTLGSNYLN MVLVDLDDSW VLASAAYNAG PSRSKAWREK LSGPTEGAIF
AETIPLIETR VYVKNVLSNA NYYSSVMNGQ TQSLKQRLGV ITPKAATQSE LP
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