| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_1688 |
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| Symbol | |
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| ID | 6183518 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010531 |
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| Strand | - |
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| Start bp | 1475695 |
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| End bp | 1478445 |
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| Gene Length | 2751 bp |
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| Protein Length | 916 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641672199 |
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| Product | methionine synthase |
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| Protein accession | YP_001798369 |
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| Protein GI | 171464256 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1410] Methionine synthase I, cobalamin-binding domain |
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| TIGRFAM ID | [TIGR00640] methylmalonyl-CoA mutase C-terminal domain
[TIGR02082] 5-methyltetrahydrofolate--homocysteine methyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.881193 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 75 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCAAGA TCGAGAAAAC AGTGATGCCA GCAATGAGGC TTTCTGGTCT TGAGCCATTT
AACGTTACGG CTGATGTTGG TTTTGTCAAT ATTGGTGAGC GTACCAATGT CACAGGATCT
AAAGCATTTG CTCGCATGAT TTTGAATAAT CAATTTGATG AGGCGCTCGC AGTAGCACGA
CAGCAAGTTG AGAATGGTGC ACAAGTTATC GATATCAATA TGGATGAAGC GATGCTTGAT
TCTGAAGCAG CAATGACACG CTTCTTAAAT TTGATTGCAT CTGAGCCCGA TATTGCCTGC
GTACCTATCA TGATTGACTC CTCTAAGTGG AGTGTCATCG AGGCGGGTTT GAAATGTATT
CAGGGTAAGC CAATCGTGAA TTCGATCTCC TTAAAAGAAG GAGAAGAGCC ATTTAGAAAG
CAAGCGCGCT TAATTCGTCG TTATGGCGCT GCTTCAGTGG TCATGGCTTT TGATGAAGTG
GGTCAAGCAG ATACGTTTAA GCGCAAGATT GAAATTTGTC AGCGTTGCTA TGAGATCTTA
GTAAATGAAA TTGGTTTTCC TGCGGAAGAC ATCATTTTTG ATCCAAATAT TTTTGCCATT
GCTACTGGTA TTGAAGAGCA CGATAACTAT GCAGTGGACT TCATAAATGC CACTCGCTGG
ATCAAAGAAA ATCTGCCTGG AGCCAAGGTC AGTGGTGGTG TTTCTAATGT GAGCTTCTCC
TTCCGCGGCA ATGACCGTGT GCGTGAGGCG ATCCATACAG TATTCCTGTA TCACGCCATT
CAGGCTGGTA TGGATATGGG CATTGTGAAT GCTGGTCAAT TGGGCGTCTA TGCTGACTTG
GATCCTGAGT TACGTGAGCG GGTTGAGGAT GCTGTTCTTA ATCGCTTTAA AGAAAAGGAT
GGCAAAACAC CTACTGAACG CCTGCTCGAT ATTGCCGATC AATTTAAAGG CGGTGGTGCG
AAGCAAGTTG AAAACTTGGT GTGGCGAGAA GCCCCAGTTC ATGAGCGCTT AACGCACGCC
TTAGTGCATG GCATTACGAC ATTTATTGAG GAAGATACAG AAGAACTGCG CGCAGAAATT
ATGGGTGCTG GCGGCAGACC TATTGAGGTA ATTGAAGGCC CACTCATGGA TGGCATGAAT
GTGGTCGGCG ACTTATTTGG TGCCGGCAAG ATGTTCTTGC CGCAAGTAGT TAAGAGTGCT
CGCGTGATGA AGCAAGCGGT TGCAATTTTG ATTCCATATG TCGAAGAAGA GAAGCGTCAA
CATATTGCTG TTGGTGGCGA AGCAAAAGCC AAAGGCAAAA TTGTGATGGC TACAGTGAAG
GGCGACGTGC ACGATATTGG CAAAAATATT GTGACTGTTG TTCTTCAATG TAACAACTTT
GAAGTAGTTA ATATGGGCGT GATGGTTCCT TGCGCTGAAA TTCTGAAGTG CGCCAAGGAA
GAGAATGCAG ATATCGTTGG TTTATCTGGT TTGATCACGC CCTCTCTCGA GGAGATGACT
TATGTTGCAC AAGAGATGCA ACGTGATGAC TATTTCCGTG GGCGTCAAAT CCCATTAATG
ATTGGTGGAG CAACCACTTC CCGCGTGCAT ACCGCAGTGA AGATTGCTCC ATACTATGAT
GGTCCAGTGG TTTATGTGCC CGATGCATCC CGCTCAGTTT CAGTTGCTTC AAGCTTGTTG
TCTGATGAAA GCTCTAAGAA ATTTATTCAA GATTTGCGTG ACGACTATGT GCGAATTCGT
GAGCAACATG CAAATAAGAA AGCCGCATCT ACCATTTCTT TAGAAGCTGC GCGTAAGAAT
CGTGAGATGA TCGATTGGGC TTCATATGTT CCGGAAAAGC CAAAATTTAT TGGCCGCCGT
GTATTTAAAA ACTTTGCTCT GAGTGATATC GCTAAATATA TCGACTGGAC ACCATTTTTT
CAGACTTGGG ATTTGGCGGG TAAGTTTCCT GCAATTCTCG ATGATGAAGT TGTAGGGGTT
GAGGCTCGCA AGGTATATGC GGATGCCCAG ACCTTGCTTG ATAAGCTTAT TAAGGGTCAA
TGGCTACAAG CCGATGCCGT AGTTGCTTTC TATCCCGCCA ATACTGTTGG CGACGATATA
GTTTTGTATA GTGATGAAGC GCGCGAGCAT CCTTTATTTG TATGGCATAA CTTACGTCAA
CAATCTGAGC GTCCGGTTAT AGACGGAGTT CGTAGGCCCA ATCGCTGTTT AGCTGACTAT
GTTGCCCCAA AAGATTCTGG CGTTGCCGAT TACCTTGGTT GCTTCGCTGT GACAACGGGA
CATGGCGTTG AAAAGAAAGT GGCCGAGTTT CAAGAAAAGC ATGACGACTA CAGTGCCATT
ATGTTGAAGG CCTTGGCTGA TCGTCTCGCA GAAGCATTTG CGGAATTGAT GCACCATCGT
GTGCGCACCG ATTTATGGGG CTACGCTACT GATGAAATTT TGACTAACGA TCAAATGATT
AATGAAGAGT ACCGCGGCAT TCGTCCAGCT CCCGGCTATC CTGCCTGTCC TGCCCATGAG
GTTAAAGAGG ACTTATTGCG AGTCATTGGT TCGGAAGATA TTGGTATGAC TCTGACCGAA
TCTATGGCGA TGAATCCTGC TTCTAGTGTG AGCGGTTTTT ATTTGGCTCA CCCAGATGCG
CGCTATTTTA ATGTGGGCAA GCTTTCAGAC GATCAGGTGG AAGACTTGGC AAAACGTCGC
GGCCAAAGCA TTGAGGATAC CCGCCGCCAG CTAGCAAGCT TGTTGGATTA A
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| Protein sequence | MSKIEKTVMP AMRLSGLEPF NVTADVGFVN IGERTNVTGS KAFARMILNN QFDEALAVAR
QQVENGAQVI DINMDEAMLD SEAAMTRFLN LIASEPDIAC VPIMIDSSKW SVIEAGLKCI
QGKPIVNSIS LKEGEEPFRK QARLIRRYGA ASVVMAFDEV GQADTFKRKI EICQRCYEIL
VNEIGFPAED IIFDPNIFAI ATGIEEHDNY AVDFINATRW IKENLPGAKV SGGVSNVSFS
FRGNDRVREA IHTVFLYHAI QAGMDMGIVN AGQLGVYADL DPELRERVED AVLNRFKEKD
GKTPTERLLD IADQFKGGGA KQVENLVWRE APVHERLTHA LVHGITTFIE EDTEELRAEI
MGAGGRPIEV IEGPLMDGMN VVGDLFGAGK MFLPQVVKSA RVMKQAVAIL IPYVEEEKRQ
HIAVGGEAKA KGKIVMATVK GDVHDIGKNI VTVVLQCNNF EVVNMGVMVP CAEILKCAKE
ENADIVGLSG LITPSLEEMT YVAQEMQRDD YFRGRQIPLM IGGATTSRVH TAVKIAPYYD
GPVVYVPDAS RSVSVASSLL SDESSKKFIQ DLRDDYVRIR EQHANKKAAS TISLEAARKN
REMIDWASYV PEKPKFIGRR VFKNFALSDI AKYIDWTPFF QTWDLAGKFP AILDDEVVGV
EARKVYADAQ TLLDKLIKGQ WLQADAVVAF YPANTVGDDI VLYSDEAREH PLFVWHNLRQ
QSERPVIDGV RRPNRCLADY VAPKDSGVAD YLGCFAVTTG HGVEKKVAEF QEKHDDYSAI
MLKALADRLA EAFAELMHHR VRTDLWGYAT DEILTNDQMI NEEYRGIRPA PGYPACPAHE
VKEDLLRVIG SEDIGMTLTE SMAMNPASSV SGFYLAHPDA RYFNVGKLSD DQVEDLAKRR
GQSIEDTRRQ LASLLD
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