| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_1668 |
|---|
| Symbol | |
|---|
| ID | 6183479 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010531 |
|---|
| Strand | - |
|---|
| Start bp | 1461222 |
|---|
| End bp | 1462232 |
|---|
| Gene Length | 1011 bp |
|---|
| Protein Length | 336 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 641672183 |
|---|
| Product | lipoyl synthase |
|---|
| Protein accession | YP_001798353 |
|---|
| Protein GI | 171464240 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0320] Lipoate synthase |
|---|
| TIGRFAM ID | [TIGR00510] lipoate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 66 |
|---|
| Fosmid unclonability p-value | 0.826169 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAACAA ATAAGCCAAA CATCAACACA CCTATTGAGG TGCGCCAAGA CCTCAATTAC
GACGCATCAC GTAAGCAAAA GTCGAGTGAG AAGACTGCGC GTATTCCAAT CAAGATTGTT
CCACTAGATC AAGTGCTAAA AAAGCCGGAC TGGATTCGCG TCAAGGCTGC TTCAGGCAAT
TCACGATTTA CTGAAATTAA AAATATTTTG CGTGAGAACG AACTGGTAAC TGTTTGTGAG
GAGGCAAGCT GCCCCAATAT TGGTGAGTGC TTCGGCAAAG GGACTGCAAC ATTCATGATC
ATGGGTGATA AGTGCACTCG CCGTTGCCCA TTCTGTGACG TAGGTCATGG CAGGCCAGAT
CCCCTTGATG AAAAAGAGCC GGCTAATCTA GCGCGCACTA TTGCCGCGCT TAAACTGAAC
TACGTTGTTA TCACGAGCGT GGATCGCGAT GATCTACGCG ATGGCGGCGC AATGCATTAT
GTTGATTGCA TTTCGCAATC GCGCACGCTT TCACCAAATA CTCGCATCGA AGTATTGATC
CCAGATTTTC GTGGGCGTCT TGATAAGGCT TTAGATATTT TTGCCGAGCA TGCTCCAAGT
GGTTTGCCCG ATGTGATGAA TCACAATTTG GAAACAGTTC CTCGTTTATA CAAACAAGCA
AGACCTGGCG CTGATTATCT TCACTCTTTA AAGCTTTTAA AAGACTTCAA GGAGCGTTTT
CTACATGTGC CCACCAAAGG TGGCTTGATG GTGGGTTTAG GCGAAACGGA TGAAGAGATT
TTGGAAGTTA TGCGCGATAT GCGTGAGCAC AATATCGACA TGCTGACTAT CGGCCAGTAT
CTTGCCCCTT CTGGACATCA TCTGCCAGTG ACTCGTTACG TTCATCCCGA TGTTTTTAAG
ATGTTTGAAG AGAAGGCTTA TGAAATGGGC TTCTCACATG CGGCAGTAGG CGCCATGGTG
CGCTCAAGCT ATCACGCAGA CCAGCAGGCG CATGGAGCGG GGGTTGTTTA G
|
|---|
| Protein sequence | MTTNKPNINT PIEVRQDLNY DASRKQKSSE KTARIPIKIV PLDQVLKKPD WIRVKAASGN
SRFTEIKNIL RENELVTVCE EASCPNIGEC FGKGTATFMI MGDKCTRRCP FCDVGHGRPD
PLDEKEPANL ARTIAALKLN YVVITSVDRD DLRDGGAMHY VDCISQSRTL SPNTRIEVLI
PDFRGRLDKA LDIFAEHAPS GLPDVMNHNL ETVPRLYKQA RPGADYLHSL KLLKDFKERF
LHVPTKGGLM VGLGETDEEI LEVMRDMREH NIDMLTIGQY LAPSGHHLPV TRYVHPDVFK
MFEEKAYEMG FSHAAVGAMV RSSYHADQQA HGAGVV
|
|---|
| |