Gene Pnec_1638 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnec_1638 
Symbol 
ID6182932 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. necessarius STIR1 
KingdomBacteria 
Replicon accessionNC_010531 
Strand- 
Start bp1438866 
End bp1439522 
Gene Length657 bp 
Protein Length218 aa 
Translation table11 
GC content44% 
IMG OID641672156 
Productputative transmembrane protein 
Protein accessionYP_001798326 
Protein GI171464213 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value0.211067 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones65 
Fosmid unclonability p-value0.707062 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAGTGATA AAGATTTATT AATTCCAGCA TCGCAGTTAG ATTCGTCTGC AATTAATGCG 
CGCACTCGTC GTGGTCGCGT TCAGATGCTG TTGTTATTGC TGGCTTGCGC TTCTCCAGTG 
ATTGCTTCTT ATTTTGTTTA TTACGTGATT AAGCCAGAAG GGGGTAAAAC TAATTTTGGA 
ACTCTGGTCT ACCCAGCTCA AGAGTTGAAT ACGACATGGC TTGATATACC TATGCAAGGT 
AAGTGGACTC TTTTGATTGC TCGCCCAACG GGGGAGTGCC AAATAAAGGA TGAGAAATGT 
ATTGAGGCCC TTTTCTTGAT GCGCCAAGCA AGGGTTGCCA TGGGCAGGGA AAGTAAACGC 
TTGCAGCTGA TTTGGGTTAA TACAGATGGC AAGCCTGTGG ATCCAGAAGT AAGCAAGGTT 
TATGACGAAA AAGTAGCGGG CTTGAGCATT GTTTCATTGC CATCAGACTC TAAGAGCAGG 
GCTGAATTTG AGGCCTGGTT AAATAAAGAG GGGGCGGGCA AAGAGATCCA ATTAATTGAC 
CCGAGCCCTG CAAAGATGAT GTATTTCCCA GTCACCAATT CTCCTAAAGA GTTTTCTAGT 
ATGAAGAAAG ACCTAGAGAA GCTCTTGAAG TTAAATCACA AAGGCGAGAA TTTGTAA
 
Protein sequence
MSDKDLLIPA SQLDSSAINA RTRRGRVQML LLLLACASPV IASYFVYYVI KPEGGKTNFG 
TLVYPAQELN TTWLDIPMQG KWTLLIARPT GECQIKDEKC IEALFLMRQA RVAMGRESKR 
LQLIWVNTDG KPVDPEVSKV YDEKVAGLSI VSLPSDSKSR AEFEAWLNKE GAGKEIQLID 
PSPAKMMYFP VTNSPKEFSS MKKDLEKLLK LNHKGENL