| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_1634 |
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| Symbol | |
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| ID | 6183349 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010531 |
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| Strand | + |
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| Start bp | 1435294 |
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| End bp | 1436217 |
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| Gene Length | 924 bp |
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| Protein Length | 307 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641672152 |
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| Product | RNA polymerase, sigma 32 subunit, RpoH |
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| Protein accession | YP_001798322 |
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| Protein GI | 171464209 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02392] alternative sigma factor RpoH
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.201615 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 65 |
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| Fosmid unclonability p-value | 0.773763 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTTCAAA AGAAATCCGA CAAACTGAAT TTGCAAACGC TGCCAGTCGC ACAGACTGCG
GCGGCGTCTG CATTTCCAAT GCTGCCAACT CTTGGGGTTG GCACTCTCGA TTCATACATT
GCGTACGTTA ATCGTGTACC AATGCTCAGC GCTGCGGAAG AGTTACATCT TGCGCAGGAA
TTTCGTTGCA CAGAAAATGT TGATGCCGCT AAAACTTTAG TACTTTCACA TTTGCGTTTA
GTTGTTTCTG TGGCGCGTCA ATATCTTGGC TACGGAATTC CACACGCTGA CTTAATTCAA
GAAGGCAACA TCGGCTTGAT GAAAGCCGTT AAACGCTATG ACCCCAGCAA TGGTGCGCGT
CTAGCTTCTT ATGCGATTCA TTGGATCAAG GCAGAAATTC ATGAGTACAT TCTTAAGAAC
TGGCGTTTGG TTAAAACTGC AACAACCAAA GCACAACGCA AATTGTTCTT TAACTTGCGC
AGTAATAAAC CAACCTTAAG CGCACTGACT CCAAATGAAG TAGATGCTTT GGCTAAAACG
CTTGATGTCA AAGGCTCTGA CGTTAAAGAA ATGGAAATGC GTCTTGCTGG CGGCGATGTA
GCGCTTGAAG GCGATGACAG TGACGAGGAC TCTGCTTATG CCCCTATTCA GTGGCTTGCT
GATAGTTCTC AAGAGCCTAC CGCTCGTATT GCCAGCGCTG AAGCCAATGC CCTACAGGGC
CCTAAATTAG ATCAAGCCCT TATGGCTTTA GATGAACGTA GTCGCAATAT TGTGCAATCT
CGTTGGTTGG CAATGGATGC AGAAGGTAAT GGCACTAAGA CCTTGCATGA TCTTGCCGAT
GAGTACGGCA TTTCAGCAGA ACGCGTTCGC CAAATTGAAA CTGCAGCACT CAAAAAGATG
CGTGGCTTGC TTCAAGCAGG TTAA
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| Protein sequence | MVQKKSDKLN LQTLPVAQTA AASAFPMLPT LGVGTLDSYI AYVNRVPMLS AAEELHLAQE
FRCTENVDAA KTLVLSHLRL VVSVARQYLG YGIPHADLIQ EGNIGLMKAV KRYDPSNGAR
LASYAIHWIK AEIHEYILKN WRLVKTATTK AQRKLFFNLR SNKPTLSALT PNEVDALAKT
LDVKGSDVKE MEMRLAGGDV ALEGDDSDED SAYAPIQWLA DSSQEPTARI ASAEANALQG
PKLDQALMAL DERSRNIVQS RWLAMDAEGN GTKTLHDLAD EYGISAERVR QIETAALKKM
RGLLQAG
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