Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnec_1624 |
Symbol | ipk |
ID | 6182966 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
Kingdom | Bacteria |
Replicon accession | NC_010531 |
Strand | + |
Start bp | 1426668 |
End bp | 1427558 |
Gene Length | 891 bp |
Protein Length | 296 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 641672141 |
Product | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase |
Protein accession | YP_001798312 |
Protein GI | 171464199 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1947] 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase |
TIGRFAM ID | [TIGR00154] 4-diphosphocytidyl-2C-methyl-D-erythritol kinase |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 0.431144 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 69 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGTGAATC TCGATTCTTT ATCTCTTCGC TCACCAGCTA AGCTCAATCT TTTTTTGCAT ATCGTTGGTC GCAGGACTGA TGGTTATCAC CTGCTTCAAT CTGTCTTTCA ATTAATCGAT TGGTGCGACA CGCTGCACTT GAAACGTATT TCTGAAAATG TAGTGCGGCG AATCAACCCA ATTCCCGGAG TTGCACCAGA ACACGATCTA GTGGTTCGCG CAGCAAATTT ACTAAAAGAT TTTTGCCAAT TTGAAGGCGG CGTTGAAATT AACCTGCAAA AAGAAATTCC GATGGGCGCT GGTATGGGCG GAGGATCTTC AGACGCAGCG ACTACTTTGA TCGGACTTAA CGCCCTTTGG AGTCTCAACC TTTCCAAAGA AACGCTTTGC GCCTTAGGCC TAAAGCTGGG AGCCGATGTT CCATTCTTTA TTTTTGGCAA AAATGCCTTT GTTGAGGGTG TCGGGGAGAA AATGCGAGAA ATCTCCCTCG AAACCCCTGA TTTTTTGGTC ATATTTCCCA ACCGGGGAAT TGCAACCGCT AGCATTTTTC AAGACCCGGA ATTGACCCGA GATCACGCTC AGATTACAAT TGATGGCTTT CTTACATCGC CATTATTGTA TCAATCGAAT GATTGCCAAG CGGTAGCGAT GAGGATTTAC CCAGAAGTGA AGCAAGCTTT GGATTGGATT ACCCAGGCAG TACCGGGCTC ACAGCCCCGT ATGTCAGGCT CTGGAAGTAG TGTTTTTGCA GTCTTAGACT CTAAGACTGA CATCGCAAAA CTAAAAAATT TTCTTCAAAA TCTTCCTAAA GGGTGGGTAG GTCGGGTTGT TCGGGGGCTA AATAAAAACC CCGCTTACAA TTTGATTTCA TTTCTTCAGA TTGACCTGTA G
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Protein sequence | MVNLDSLSLR SPAKLNLFLH IVGRRTDGYH LLQSVFQLID WCDTLHLKRI SENVVRRINP IPGVAPEHDL VVRAANLLKD FCQFEGGVEI NLQKEIPMGA GMGGGSSDAA TTLIGLNALW SLNLSKETLC ALGLKLGADV PFFIFGKNAF VEGVGEKMRE ISLETPDFLV IFPNRGIATA SIFQDPELTR DHAQITIDGF LTSPLLYQSN DCQAVAMRIY PEVKQALDWI TQAVPGSQPR MSGSGSSVFA VLDSKTDIAK LKNFLQNLPK GWVGRVVRGL NKNPAYNLIS FLQIDL
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