| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_1622 |
|---|
| Symbol | |
|---|
| ID | 6183379 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010531 |
|---|
| Strand | - |
|---|
| Start bp | 1424297 |
|---|
| End bp | 1425133 |
|---|
| Gene Length | 837 bp |
|---|
| Protein Length | 278 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 641672139 |
|---|
| Product | formamidopyrimidine-DNA glycosylase |
|---|
| Protein accession | YP_001798310 |
|---|
| Protein GI | 171464197 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0266] Formamidopyrimidine-DNA glycosylase |
|---|
| TIGRFAM ID | [TIGR00577] formamidopyrimidine-DNA glycosylase (fpg) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 0.414092 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 69 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCAGAAC TCCCGGAAGT AGAAGTAACA CGACTAGGAA TCGCTCCCCA CCTTGAGGGG
CGTAAAGTCA GTGCCGTCAA GATTATTGAT GGCCGCTTGC GTTGGCCGGT GCCTGCCAAT
TTAACTAAGA CCTTGCCCGG ACAAACGGTT AACGGCATAG AGCGGCGCGG GAAGTACCTC
TTATTGGAGA TGGATACAGG CTATCTATTA ATTCATTTGG GAATGACGGG AACCTTGCGA
GTGTTGCCAA GTTCGGATCC CCTTAAAACT CACGATCGAG TAACACTTGA GTTTGGAAAG
CTGAGCTTAC GTTTGCATGA CCCGCGAAAA TTTGGAGCTG TTTTGTGGCA CCCCAAATCA
AAAGGCCCAA TTAAGAAATT TATCCTTTTG CAAAAGCTCG GAGTAGAGCC ATTTTCTTCG
GAGTTTTCAG GTGAGTTGGG CGCAGAGATT TTGTATCAAA CCTCTCGCAA GCGAAGTGTT
GCAGTTAAGC AATTTCTTTT GGCTGGTCAG GCAGTAGTTG GTGTTGGCAA TATTTATTGT
TCTGAAAGCT TGTTTGAGGC AGGCATTCAT CCCGCTAAGG CGGCCGGTAA ATTGACTAGG
CCACAATGTT CGCGCCTCGC TAAGGCTGTC AGATCGATAC TGAAAAAAGC TATCGAAGCA
GGCGGTAGCT CATTGAAAGA TTTTGTGAAT AGTGATGGTG ACCCTGGGCA CTTTATGGTC
CAAACCAAAG TCTATGATCG CAAAGGTTTG CCATGCAAGG TATGTAAAAC ACCCATTAGC
CAGATGGTGC AGGGCCAGCG CACTACCTAC TTCTGTTCAC AATGTCAAAA ACGTTGA
|
|---|
| Protein sequence | MPELPEVEVT RLGIAPHLEG RKVSAVKIID GRLRWPVPAN LTKTLPGQTV NGIERRGKYL
LLEMDTGYLL IHLGMTGTLR VLPSSDPLKT HDRVTLEFGK LSLRLHDPRK FGAVLWHPKS
KGPIKKFILL QKLGVEPFSS EFSGELGAEI LYQTSRKRSV AVKQFLLAGQ AVVGVGNIYC
SESLFEAGIH PAKAAGKLTR PQCSRLAKAV RSILKKAIEA GGSSLKDFVN SDGDPGHFMV
QTKVYDRKGL PCKVCKTPIS QMVQGQRTTY FCSQCQKR
|
|---|
| |