| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_1619 |
|---|
| Symbol | |
|---|
| ID | 6183804 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010531 |
|---|
| Strand | + |
|---|
| Start bp | 1421342 |
|---|
| End bp | 1422328 |
|---|
| Gene Length | 987 bp |
|---|
| Protein Length | 328 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 641672136 |
|---|
| Product | HPr kinase/phosphorylase |
|---|
| Protein accession | YP_001798307 |
|---|
| Protein GI | 171464194 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG1493] Serine kinase of the HPr protein, regulates carbohydrate metabolism |
|---|
| TIGRFAM ID | [TIGR00679] Hpr(Ser) kinase/phosphatase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 66 |
|---|
| Fosmid unclonability p-value | 0.984751 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTCAGC CCTTACTCCT AGATGGAGTA ACTGCTCAGC AGATTTTTGA TGACAATGTT
TCAGAATTAA AACTGTCTTG GATTGGCGGC CTTGAAGGTG CTGATCGCGC ATTTCCACCT
GAGGCCGTAA AGGCCACTGC TGCCAGTTCA GACTTGGTAG GTCACTTGAA CCTCATTCAC
CCAAGTCGTA TTCAAATCTT CGGCGAGCAA GAGGTTGACT ATCACGCCGC TTTAGAGCCA
AAACAAAGAC AAGAGCAAAT CGCCAGCTTG ATCTCTAAAA CTCCGCCATG CGTCATTGTT
GCCGATGGTA AAAGTGCAGA TCCCGACTTA CAGCTTTTTT GCCAGCGCTC TTCTACGCCT
TTATTCACCA CTGCAATTTC TGCTGCGGAG GTAATTGATC ATTTAAGAAC TTACCTAACC
AAAATTGGTG CGCCTCAGAT TACGATGCAT GGTGTCTTTA TGGACATCCT GGGTCTAGGG
GTCCTACTCA CCGGCGAATC CGGTCTTGGC AAGAGCGAAC TGGGTCTTGA GTTGATCTCC
CGTGGGCATG GGCTGGTTGC AGACGACGCA GTGGACTTTG CGCGCCTTGG ATCTGACTAT
ATTGAGGGTC GCTGCCCTGT CATCTTACGT AACTTACTTG AAGTTCGTGG GTTGGGCTTA
TTAGATATTC GCACAATCTT TGGTGAAACT GCGGTTCGTC GTAAATTAAA ACTTCGCTTG
ATAGTTCAGC TTGTACGTAG AACTGATGGT GAATTCGAGC GGTTACCGCT TGAAGCTCAA
CATATCGATG TATTAGGTAT TCCAATCCGC ACCGTCAAAA TTCAAGTTGC TGCAGGACGC
AACTTAGCTG TGTTGGTTGA AGCGGCTGTT CGCAATACGA TTTTGCAATT GCGTGGCATT
GATACCTTAA AAGAATTTAT TGAGCGTCAA CGCATTCAGA TGAATGCTGA AGCGGACTCT
ATTAAGTCGC AAGGTCGCCT ACTTTAA
|
|---|
| Protein sequence | MTQPLLLDGV TAQQIFDDNV SELKLSWIGG LEGADRAFPP EAVKATAASS DLVGHLNLIH
PSRIQIFGEQ EVDYHAALEP KQRQEQIASL ISKTPPCVIV ADGKSADPDL QLFCQRSSTP
LFTTAISAAE VIDHLRTYLT KIGAPQITMH GVFMDILGLG VLLTGESGLG KSELGLELIS
RGHGLVADDA VDFARLGSDY IEGRCPVILR NLLEVRGLGL LDIRTIFGET AVRRKLKLRL
IVQLVRRTDG EFERLPLEAQ HIDVLGIPIR TVKIQVAAGR NLAVLVEAAV RNTILQLRGI
DTLKEFIERQ RIQMNAEADS IKSQGRLL
|
|---|
| |