Gene Pnec_1609 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnec_1609 
Symbol 
ID6183289 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. necessarius STIR1 
KingdomBacteria 
Replicon accessionNC_010531 
Strand
Start bp1410612 
End bp1411796 
Gene Length1185 bp 
Protein Length394 aa 
Translation table11 
GC content45% 
IMG OID641672126 
Productmajor facilitator superfamily MFS_1 
Protein accessionYP_001798297 
Protein GI171464184 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones69 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATCCCT CTGAACTCCG CTCTACTCTG GCCTTAGCAG GCATCTTTGG CCTTCGCATG 
CTGGGCCTAT TTCTGCTATT GCCCATCTTT AGCATTCATG CGCGGGGCTT GCCGGGAGGT
GAGCATGCAC TATGGGTGGG CTTAATCCTC GGAATCTTTA ATATTGTCCA GGCCTGTTTT
TATATCTCAT TAGGCCGCTT ATCTGACCGA ATTGGCCGTA AACCAGTAGT TTTATGGGGA
TTGTTCTTAT TCGTGGCTGG CGCTCTGATC TGTGCTGCCA GGGATGATTT GCTGTGGATT
GCGATAGGTC GCGGAATTAT GGGCGCTGGC GCAGTTTCAG CAGCTATTTC AGCCTGGGTG
GCCGATTTAA CTCATGAACA AGTTCGTACC AGGGCCATGG CCTTAGTTGG CGGCAGCATT
GCTCTGTCCT TTGCATTGTC ATTGGTCATC GCTGCGCCAA TTTATCACGC AATTGGCCTT
GGCGGAATTT TTATTGTTCT AGCCGTCTTG GGTGTTATCG CGATGTTCGT GACATATTAC
GTTTTACCTA CAAGCAAACC AGAAACTAAA GTTCAGCAGA CTTCTTTGAA AGAAGTATTT
TTTCGCCCAG AACTGATGCG TTTAAATCTA GGGGTATTTG TATTGCACGC AACCCAGGTA
GCCATGTTCT TGGTGGTTCC AAGATTGTTA GTGCAGGCTG GATTGCCACT TTCATCGCAT
TGGGAAATTT ATCTTCCTGT AGTACTGCTC TCATTTGTCT TTATGGCCCC TGCAATTATT
TACGGCGAAA AAAAACAGAA ATTAAGAACA GTATTGTTGA TTGCAATTGT TTTATTGCTT
ATTGCAGAAT TGTTTTTTAC CCAAGCCAAT TCAGTAGTGA CAATTGCAGC TGCGTTATTG
ATTTATTTTG TTGGCTTTAA TTTGCTGGAA GCTTTACAAC CCTCTTTGGT ATCGCGTTTT
GCAAAAGAAT CTAAAGGCAC TGCATTGGGT GTTTACAACA CCACACAATC GATTGGCCTG
TTTTCAGGGG CTGTAATTGG AGGTTATTTA ATGGATAGCC ATGGTGATTT ATCGGTCTTT
GCGATGGGCA CGGCACTCTT AGTTTGCTGG CTTATAATTG CTTGGTCGAT GGGTGAATTG
CCAACGAGAG CAACTGAATC AAAGGGTGTG GCCACAGAGG CATAA
 
Protein sequence
MNPSELRSTL ALAGIFGLRM LGLFLLLPIF SIHARGLPGG EHALWVGLIL GIFNIVQACF 
YISLGRLSDR IGRKPVVLWG LFLFVAGALI CAARDDLLWI AIGRGIMGAG AVSAAISAWV
ADLTHEQVRT RAMALVGGSI ALSFALSLVI AAPIYHAIGL GGIFIVLAVL GVIAMFVTYY
VLPTSKPETK VQQTSLKEVF FRPELMRLNL GVFVLHATQV AMFLVVPRLL VQAGLPLSSH
WEIYLPVVLL SFVFMAPAII YGEKKQKLRT VLLIAIVLLL IAELFFTQAN SVVTIAAALL
IYFVGFNLLE ALQPSLVSRF AKESKGTALG VYNTTQSIGL FSGAVIGGYL MDSHGDLSVF
AMGTALLVCW LIIAWSMGEL PTRATESKGV ATEA