Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnec_1609 |
Symbol | |
ID | 6183289 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
Kingdom | Bacteria |
Replicon accession | NC_010531 |
Strand | - |
Start bp | 1410612 |
End bp | 1411796 |
Gene Length | 1185 bp |
Protein Length | 394 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 641672126 |
Product | major facilitator superfamily MFS_1 |
Protein accession | YP_001798297 |
Protein GI | 171464184 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 69 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATCCCT CTGAACTCCG CTCTACTCTG GCCTTAGCAG GCATCTTTGG CCTTCGCATG CTGGGCCTAT TTCTGCTATT GCCCATCTTT AGCATTCATG CGCGGGGCTT GCCGGGAGGT GAGCATGCAC TATGGGTGGG CTTAATCCTC GGAATCTTTA ATATTGTCCA GGCCTGTTTT TATATCTCAT TAGGCCGCTT ATCTGACCGA ATTGGCCGTA AACCAGTAGT TTTATGGGGA TTGTTCTTAT TCGTGGCTGG CGCTCTGATC TGTGCTGCCA GGGATGATTT GCTGTGGATT GCGATAGGTC GCGGAATTAT GGGCGCTGGC GCAGTTTCAG CAGCTATTTC AGCCTGGGTG GCCGATTTAA CTCATGAACA AGTTCGTACC AGGGCCATGG CCTTAGTTGG CGGCAGCATT GCTCTGTCCT TTGCATTGTC ATTGGTCATC GCTGCGCCAA TTTATCACGC AATTGGCCTT GGCGGAATTT TTATTGTTCT AGCCGTCTTG GGTGTTATCG CGATGTTCGT GACATATTAC GTTTTACCTA CAAGCAAACC AGAAACTAAA GTTCAGCAGA CTTCTTTGAA AGAAGTATTT TTTCGCCCAG AACTGATGCG TTTAAATCTA GGGGTATTTG TATTGCACGC AACCCAGGTA GCCATGTTCT TGGTGGTTCC AAGATTGTTA GTGCAGGCTG GATTGCCACT TTCATCGCAT TGGGAAATTT ATCTTCCTGT AGTACTGCTC TCATTTGTCT TTATGGCCCC TGCAATTATT TACGGCGAAA AAAAACAGAA ATTAAGAACA GTATTGTTGA TTGCAATTGT TTTATTGCTT ATTGCAGAAT TGTTTTTTAC CCAAGCCAAT TCAGTAGTGA CAATTGCAGC TGCGTTATTG ATTTATTTTG TTGGCTTTAA TTTGCTGGAA GCTTTACAAC CCTCTTTGGT ATCGCGTTTT GCAAAAGAAT CTAAAGGCAC TGCATTGGGT GTTTACAACA CCACACAATC GATTGGCCTG TTTTCAGGGG CTGTAATTGG AGGTTATTTA ATGGATAGCC ATGGTGATTT ATCGGTCTTT GCGATGGGCA CGGCACTCTT AGTTTGCTGG CTTATAATTG CTTGGTCGAT GGGTGAATTG CCAACGAGAG CAACTGAATC AAAGGGTGTG GCCACAGAGG CATAA
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Protein sequence | MNPSELRSTL ALAGIFGLRM LGLFLLLPIF SIHARGLPGG EHALWVGLIL GIFNIVQACF YISLGRLSDR IGRKPVVLWG LFLFVAGALI CAARDDLLWI AIGRGIMGAG AVSAAISAWV ADLTHEQVRT RAMALVGGSI ALSFALSLVI AAPIYHAIGL GGIFIVLAVL GVIAMFVTYY VLPTSKPETK VQQTSLKEVF FRPELMRLNL GVFVLHATQV AMFLVVPRLL VQAGLPLSSH WEIYLPVVLL SFVFMAPAII YGEKKQKLRT VLLIAIVLLL IAELFFTQAN SVVTIAAALL IYFVGFNLLE ALQPSLVSRF AKESKGTALG VYNTTQSIGL FSGAVIGGYL MDSHGDLSVF AMGTALLVCW LIIAWSMGEL PTRATESKGV ATEA
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