| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_1590 |
|---|
| Symbol | rplM |
|---|
| ID | 6183514 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010531 |
|---|
| Strand | - |
|---|
| Start bp | 1389413 |
|---|
| End bp | 1389841 |
|---|
| Gene Length | 429 bp |
|---|
| Protein Length | 142 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 641672110 |
|---|
| Product | 50S ribosomal protein L13 |
|---|
| Protein accession | YP_001798281 |
|---|
| Protein GI | 171464168 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0102] Ribosomal protein L13 |
|---|
| TIGRFAM ID | [TIGR01066] ribosomal protein L13, bacterial type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.00000000000486571 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 66 |
|---|
| Fosmid unclonability p-value | 0.621291 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAACTT TTTCTGCAAA ATCCCATGAG GTAGTGCATG AATGGTTCGT GATTGACGCT
ACGGACAAAG TCCTCGGTCG TGTCGCCAGT GAAGTGGCAC TCCGTCTACG CGGCAAGCAC
AAGCCTGAAT ACACCCCACA CGTTGATACT GGCGACTTTA TTGTTGTCAT CAATTCTTCT
AAGCTCCGTG TCACTGGCAC AAAAGGCTTG AACAAAATTT ATTACCGTCA CAGCGGATAC
CCAGGTGGTA TTAGCTCGAC TAACTTCGAC AAAATGCAAG ATCGTTTCCC AGGTCGCGCT
TTGGAGAAGG CTGTGAAGGG TATGTTGCCA AAAGGCCCAC TAGGCTATGC CATGATTAAG
AAATTAAAAG TCTACGGCGA CGCCAATCAT CCGCATGCGG CTCAACAGCC AAAAGCGTTA
GAGATTTAA
|
|---|
| Protein sequence | MKTFSAKSHE VVHEWFVIDA TDKVLGRVAS EVALRLRGKH KPEYTPHVDT GDFIVVINSS
KLRVTGTKGL NKIYYRHSGY PGGISSTNFD KMQDRFPGRA LEKAVKGMLP KGPLGYAMIK
KLKVYGDANH PHAAQQPKAL EI
|
|---|
| |