Gene Pnec_1562 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnec_1562 
Symbol 
ID6182940 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. necessarius STIR1 
KingdomBacteria 
Replicon accessionNC_010531 
Strand+ 
Start bp1359585 
End bp1360847 
Gene Length1263 bp 
Protein Length420 aa 
Translation table11 
GC content43% 
IMG OID641672083 
Productprotein of unknown function DUF1504 
Protein accessionYP_001798254 
Protein GI171464141 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones87 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACTTTA CCCCTATTGA ACTTGGTGCA AGCGTTATTT TTACAATTGC AGTTTTACAT 
ACATTTTGTA CCGGCTATTT TGAAGAGGTA GCAAAAAAAT CTCCAAGACA TGCTGGACTT 
TGGCATCTTC TAGGCGAAGT AGAAATCGTT TTTGGATTTT GGGCCGCTAT CTTAGTTATT 
TTTATTTCAC TTCAGAGTGA CTTAAGTTCA GCCAAAGAGT TTTTAAACAA ACGCAACTTC 
ACTGAACCAC TATTTGTCTT TGCAATCATG ATTGTGGCTG GCACAAAGCC AATCCTATAC 
TTTGCCACCA AAATACTCCG TGTTTTAGCT CAAGTAGTTC AATATACATT GCGGATCAGG 
AGCGCTCCTG CCCTATATTT TTTAACCCTA GGAATCACGC CACTATTGGG TTCTTTTATT 
ACCGAGCCTG CCGCCATGAC CCTAGCGGCC TTTTTGCTAC GTGACTTGGT ATATCGCCAT 
AAGTGCTCAA CAACTCTTTT GTTTGGAACT CTTGGTGTGC TCTTTGTCAA TATTTCGATC 
GGGGGGGCAC TTACTAATTT TGCAGCTCCA CCGGTACTGA TGGTGGCATC TACTTGGGAG 
TGGAGTTCGG CATTTATGTT TGCCAACTTT GGATTGGAGT CCTGCACTGC AATTTTTATT 
AACGCTCTTG TTACCACACT TTTATTTCAT CGCCAACTCA TTGAACTTGA CACGGAAAAG 
AAGGAAGTAA AAATTCCTAT AGCCGTGATT TTGATGCATC TACTTTTCTT ATTTGGAATG 
GTTGTATTTG CACATGATCC TATTATTTTT ATGTGGATTT TGTTGTTCTT TATCGGCTAC 
ACCACCGCTT ATCCAAAACA TCAAAGCCCA TTAATTCTGA AAGAAGCACT TCTCGTCGGA 
TTCTTCTTAG GCGGTTTAGT CGTGCTAGGC GCTCTACAAG GCTGGTGGCT ACAACCAATT 
TTAGAAATGA TGAGTCCAAC TACCGTCTTC TATGGCAGCC TTGTTCTCAC TGCTTTTACC 
GACAATGCGG CACTCACCTA CTTAGGTTCT TTAGTTACTG AAACCTCCCC TGAATTTAAA 
CTAGCCTTGG TTGGAGGTGC CGTAGCAGGT GGCGGACTCA CCGTTATTGC CAACGCACCC 
AACCCAGCGG GCATCGCCAT CTTGCAACAG CACTTCCCTA ATGGCGCAGT TTCAGCGCTT 
TACTTGCTAA TGGCTGCTAT TCCACCAACA ATAGTGGCGA TACTGGCTTA TCGACTTATC 
TAA
 
Protein sequence
MNFTPIELGA SVIFTIAVLH TFCTGYFEEV AKKSPRHAGL WHLLGEVEIV FGFWAAILVI 
FISLQSDLSS AKEFLNKRNF TEPLFVFAIM IVAGTKPILY FATKILRVLA QVVQYTLRIR 
SAPALYFLTL GITPLLGSFI TEPAAMTLAA FLLRDLVYRH KCSTTLLFGT LGVLFVNISI 
GGALTNFAAP PVLMVASTWE WSSAFMFANF GLESCTAIFI NALVTTLLFH RQLIELDTEK 
KEVKIPIAVI LMHLLFLFGM VVFAHDPIIF MWILLFFIGY TTAYPKHQSP LILKEALLVG 
FFLGGLVVLG ALQGWWLQPI LEMMSPTTVF YGSLVLTAFT DNAALTYLGS LVTETSPEFK 
LALVGGAVAG GGLTVIANAP NPAGIAILQQ HFPNGAVSAL YLLMAAIPPT IVAILAYRLI