| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_1555 |
|---|
| Symbol | |
|---|
| ID | 6183275 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010531 |
|---|
| Strand | - |
|---|
| Start bp | 1355137 |
|---|
| End bp | 1355766 |
|---|
| Gene Length | 630 bp |
|---|
| Protein Length | 209 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 641672077 |
|---|
| Product | protein of unknown function UPF0126 |
|---|
| Protein accession | YP_001798248 |
|---|
| Protein GI | 171464135 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2860] Predicted membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 0.283277 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 85 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAGAGA TTAATTTCTG GATCGGCATT ATTGCAACCA TGGCCTTTGC GGTCACGGGG
GTTTTGGCTA TTGCAGATCG CGGGGTCGAT CTCTTCGGTG TTTTAGTGCT CGGTTTAATC
ACTGCGATTG GCGGAGGCAC TATTCGCGAC ATTATTTTGG AAGCTCCTAT TTTCTGGTCG
GATAACCAAA TTTACGTGTG GCTTGCTTTG GGCGCCAGCG TAATCGTTTT TTTTGCTGAA
TCGTTTTTTA CTCAACCACA AATTTATCGT TGGATGTTGT ATATCGATGG CTTTGGTGCA
GCGCTATTCG CAATTCAGGG TGCAGATAAA GCGTGGGGTA TGAATTTTGG TTTACCTGTT
GCACCAGTGA TATTGGGGGT GGTTACCGCC ATTGGTGGTG GTTTATTGCG TGATGTGCTT
GCTGGTAGAA AAACCTTAAT CATGTCGCAT GAGCTCTATG CCATCCCGGT GACTTTAGGC
TGCGTTGCTT ACGTTCTGGT GTTGAACTTT TTGCCACAGT ATGTTGTCGA GGGCTCTGTG
ATTTGTATGC TCGGTATTTT TGGATTACGC GCAGCCGCAA TTTATTGGGA TCTGCGCGTA
CCTAAAATGT TTATTACTAA AACGCGCTAA
|
|---|
| Protein sequence | MEEINFWIGI IATMAFAVTG VLAIADRGVD LFGVLVLGLI TAIGGGTIRD IILEAPIFWS
DNQIYVWLAL GASVIVFFAE SFFTQPQIYR WMLYIDGFGA ALFAIQGADK AWGMNFGLPV
APVILGVVTA IGGGLLRDVL AGRKTLIMSH ELYAIPVTLG CVAYVLVLNF LPQYVVEGSV
ICMLGIFGLR AAAIYWDLRV PKMFITKTR
|
|---|
| |