Gene Pnec_1548 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnec_1548 
Symbol 
ID6183904 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. necessarius STIR1 
KingdomBacteria 
Replicon accessionNC_010531 
Strand
Start bp1348418 
End bp1348936 
Gene Length519 bp 
Protein Length172 aa 
Translation table11 
GC content52% 
IMG OID641672072 
Productregulatory protein RecX 
Protein accessionYP_001798244 
Protein GI171464131 
COG category[R] General function prediction only 
COG ID[COG2137] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00000023294 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones95 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCTGAAT TAGGTAATAA AAAGCCCAAA CAAAGCCCGA GTCTCAAAGC TCGGGCTTTG 
CGCCTTTTAT CCCTGAGGGA ATACAGTCGC AAAGGTTTGG CCGCCAAATT GGCTGAATCG
GAGGCGAGAT GGGGCAAGCT GGGTGGAGTT CAGGCTGAGC AAACACCAGA ATCCAGGGAT
TCTCAGATTG AAGCGGTTTT AGATGATTTT GAGGCCAGGG GCTGGCTATC GGATGAGCAT
TTTGCAGAGA CCTTGGTCCG CCGTCGGAGC GAGCGTTATG GAATTAGAAA GATAGCTGAC
GAGCTCGAAA GGGCTGGGGT AGATCCCAAG CAGTCAGTCA AGCTGCTGAT GGATCTCAAA
GAGACTGAAT TTCAGCGTGC TTATGACCTT TGGATGCGGA AATATGGCCG GCGCGCCACT
GAACAGAAGG AGCGTGCCAG GCAATACCGA TTTCTCGCTT CCAAGGGATT TGGATCCGAT
ATTGTGGCCA GGGTCATAGG CGGACAAACC CCCGATTAG
 
Protein sequence
MSELGNKKPK QSPSLKARAL RLLSLREYSR KGLAAKLAES EARWGKLGGV QAEQTPESRD 
SQIEAVLDDF EARGWLSDEH FAETLVRRRS ERYGIRKIAD ELERAGVDPK QSVKLLMDLK
ETEFQRAYDL WMRKYGRRAT EQKERARQYR FLASKGFGSD IVARVIGGQT PD