| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_1533 |
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| Symbol | |
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| ID | 6183400 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010531 |
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| Strand | + |
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| Start bp | 1337287 |
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| End bp | 1338210 |
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| Gene Length | 924 bp |
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| Protein Length | 307 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641672060 |
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| Product | branched-chain amino acid aminotransferase |
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| Protein accession | YP_001798232 |
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| Protein GI | 171464119 |
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| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
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| COG ID | [COG0115] Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase |
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| TIGRFAM ID | [TIGR01122] branched-chain amino acid aminotransferase, group I |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 84 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGATGT CCGACCGCGA TGGCTTTATT TGGAATGATG GGAAGCTAAT TCCTTGGCGT
GAGGCCAATG TTCACGTATT AACACACAGT TTACACTACG GAATGGGCGT ATTTGAGGGC
ATTCGGGCCT ACAAAACCCC CCAGGGAAGC GCCATTTTCC GCCTTCCAGA GCACGTAAAA
CGCCTGTTTA ACGGAACCAA GATCTTCCAA ATGAACATGC CTTACAGCCC TGAAGAGATC
TCTAAAGGCA TTATTGACAT GGTCAAAAGC AATAAGCTGG AAGCCTGCTA TATCCGCCCA
ATCATTTTTA TTGGCTCCCA AAAGCTCGGA ATCTCCCCAA AAGGGAACAG CATTCATACC
TCAATCGCCG CCTGGGAATG GGGCGCCTAT TTGGGTGAAG ATGGTCTAAA CAAGGGTATT
CGGGTGAAAA CCTCCTCATT TACTCGCCAT TTTGTTAACT CATCCCTCGT GCGTGCAAAA
GCATCTGGCT ACTACATCAA CTCCATTTTG GCCAATCAAG AAGTTACTGC CAATGGATAT
GACGAAGCAT TGTTGCTCGA CACTGAAGGT TATGTTTCTG AAGGCTCTGG CGAAAACCTC
TTTATGGTTC GCAACGGTAT TGTGTATACA CCAGACCTAG CCTCCTGCTT AGATGGCATT
ACACGTGACT CTGTAATGCA GATCGCAAAA GATCTAGGTT ACGAAGTTCG TGAAAAACGT
CTCACTCGTG ATGAAGTCTA TTCTGCTGAT GAAGCATTCT TCACTGGTAC GGCTGCTGAA
GTAACTCCAA TTCGTGAGTT GGATGACCGC ATCATCGGTG ATGGTAAACG TGGTCCGATT
ACAGAACAAA TTCAGAAGAC GTATTTCGAT GCGGTGTACG GCAGAAGCGA TCAATACAAA
TCTTGGCTCA CTTACGTAAA GTAA
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| Protein sequence | MSMSDRDGFI WNDGKLIPWR EANVHVLTHS LHYGMGVFEG IRAYKTPQGS AIFRLPEHVK
RLFNGTKIFQ MNMPYSPEEI SKGIIDMVKS NKLEACYIRP IIFIGSQKLG ISPKGNSIHT
SIAAWEWGAY LGEDGLNKGI RVKTSSFTRH FVNSSLVRAK ASGYYINSIL ANQEVTANGY
DEALLLDTEG YVSEGSGENL FMVRNGIVYT PDLASCLDGI TRDSVMQIAK DLGYEVREKR
LTRDEVYSAD EAFFTGTAAE VTPIRELDDR IIGDGKRGPI TEQIQKTYFD AVYGRSDQYK
SWLTYVK
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