| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_1509 |
|---|
| Symbol | secF |
|---|
| ID | 6183481 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010531 |
|---|
| Strand | + |
|---|
| Start bp | 1313439 |
|---|
| End bp | 1314413 |
|---|
| Gene Length | 975 bp |
|---|
| Protein Length | 324 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 641672039 |
|---|
| Product | preprotein translocase subunit SecF |
|---|
| Protein accession | YP_001798211 |
|---|
| Protein GI | 171464098 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0341] Preprotein translocase subunit SecF |
|---|
| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR00966] protein-export membrane protein SecF |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 63 |
|---|
| Fosmid unclonability p-value | 0.444089 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAATTTT TCCGGATCAA AAAAGATATC CCTTTCATGC GCCATGCATT GGTGCTCAAT
GCGATTTCTT TAGTTACTTT TTTAGCAGCA GTCTTTTTCC TCTGGCATAA CGGCCTGCAC
CTCTCCATCG AATTTACTGG CGGTACTGTC ATGGAGGTCA GCTACCCACA AACTGCACCA
CTGGACTCCA TTCGCGCAAA AGTTGAAAAG CTTGGTTACG CAGACACCCA AATTCAGAAC
TTTGGTAGCT CACACGATGT GATGATTCGC CTGCCCTTGC AAAAAGATGC TGAAGGCAAA
CTCATCTCAT CAGCAGACCA AAGCACAGCG GTATTGCAAG TGCTTGATCC TGCTACTACT
GGCGTGAAAC TTCAGCGCGT AGAGTTTGTT GGACCACAAG TTGGTCAAGA GCTCGCCATA
GATGGCTTAA AAGCTTTGAT TTTTGTCATC ATCGGCATTG TGATTTATCT TTCTTTCCGT
TTTGAGTGGA AGTTTGCGGT TGCCGGCATT ATTGCGAACT TGCATGACGT CATCATCATC
TTGGGCTTCT TTGCTTTTTT CCAATGGGAA TTCTCCCTCT CGGTATTGGC GGCCGTTCTC
GCCGTGCTTG GCTACTCCGT TAATGAATCC GTGGTGATCT TTGACCGTAT TCGTGAAAAC
TTCCGCAAAT ACCGCAAGAT GAACACTCGC GAGATTATTG ATAACGCAAT CACCAGCACT
ATCAGCCGCA CAGTCATCAC TCACGGCAGT ACTGAGATGA TGGTTTTAGC AATGCTGATC
TTCGGCGGTC CAACACTATT TTACTTTGCC TTGGCTCTGA CCATCGGCAT TTTGTTTGGC
ATTTACTCTT CAGTCTTCGT TGCTGCAGCC TTAGCCATGT GGCTCGGTGT TACACGCGAA
GATTTGGTGA AAGGCGATAA AAAGCCAGAT GACAATGCCC GTAATGATGA CCCCAACTAT
GGGGCACGGG TTTAA
|
|---|
| Protein sequence | MEFFRIKKDI PFMRHALVLN AISLVTFLAA VFFLWHNGLH LSIEFTGGTV MEVSYPQTAP
LDSIRAKVEK LGYADTQIQN FGSSHDVMIR LPLQKDAEGK LISSADQSTA VLQVLDPATT
GVKLQRVEFV GPQVGQELAI DGLKALIFVI IGIVIYLSFR FEWKFAVAGI IANLHDVIII
LGFFAFFQWE FSLSVLAAVL AVLGYSVNES VVIFDRIREN FRKYRKMNTR EIIDNAITST
ISRTVITHGS TEMMVLAMLI FGGPTLFYFA LALTIGILFG IYSSVFVAAA LAMWLGVTRE
DLVKGDKKPD DNARNDDPNY GARV
|
|---|
| |