| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_1508 |
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| Symbol | |
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| ID | 6183328 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010531 |
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| Strand | + |
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| Start bp | 1311576 |
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| End bp | 1313435 |
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| Gene Length | 1860 bp |
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| Protein Length | 619 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 641672038 |
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| Product | protein-export membrane protein SecD |
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| Protein accession | YP_001798210 |
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| Protein GI | 171464097 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 62 |
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| Fosmid unclonability p-value | 0.512393 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATCGCT ACCCTCTCTG GAAATATCTA GTCATCGCCG TTGCATTACT GATCGGCGGA
CTATATTCAT TACCCAATTT CTATGGTGAG GCCCCAGCGG TTCAAGTCTC GTCTACCAAA
CCAACCATCA AGGTTGATTT TGCAACACAG TCTCGTGTAG AAAAAATTCT GACTGAAGCC
AACATTAATA ACACCGGTGT TTTCTTTGAA GTTGCCGGCA ATGTGGGCTC CATCAAAGTT
CGTTTTGACA ATACTGACAT TCAATTACGT GCACGCGACC TCTTGCAACA GAAATTAAAT
GTTGATCAAA ATGATCCGAA TTACACCGTT GCACTGAACT TACTCTCTAA TACCCCGGGA
TGGCTCAATG CAATGAATGC TTTGCCAATG CCCTTAGGTC TCGACTTGCG TGGTGGCGTG
TACTTCCTCC TCCAGGTAGA TATGAAGGGT GCGGTGCAGA AGAAGGTCAC TTCTCTAGCT
ACGGACATTC GTGGTCAGTT GCGCGACAAA AATATTCGTC ACCAGGGTAT TGAGCGTGGT
GCCGATTTCA TTTCCATCAA CTTTGGTAGC ACCGCTGATG CAGAGGCAAC TCGCTCTGTA
CTAATGACAG CGCAACCAGA ATTGATTTGG CAGGTAAAGC CTACTGGTCT ATCTCCAAAA
GTGGTTGGCG AATTTAAGTC GACAGCTTTA AAAGAAATTC ATGATAATGC GGTAAAGCAA
AACATCATCA CCCTGAATAA ACGTGTGAAT GAGTTAGCGG TTAAAGAACC AGTCATTCAA
CAACAGGGCG CCGAGCGCAT TGTGGTTCAA CTACCAGGCG TTCAAGATAC CGCTCGTGCC
AAAGATATTA TTGGTCGTAC GGCTACACTC GAATCACGCC TTGCTGATCC ACTTGTTACC
ACCATCGCCA TCGGCGAAAC TCCGCCGCCA GGCATGGATA CCTTCCGTTT TGGTGAAAAC
CGTTTAGGGG TATTTAAAAA ATCAGTAATC TTCAGTGGTG ACCGCATTAC CGATGCAAGC
GCTGGTTTTG ATCAAAACCA GCGCCCTTCT GTAAACATCT CTTTAGATGC AGCTGGTGGC
CGCGTCATGC AAGAAGTCAC CCGTGAAAAT ATCGGGAAGC CGATGGGCAT GATCTTGTTT
GAAAAAGGTA AGGGTGAGGT ACTCACTATT GCCACATTCC AAAGCGAATT TAGCTCCAAG
TTCCAAATCA CTGGTCAACC GACTACTGAA AGCGCAAATG ACTTAGCTCT TCTGTTGCGT
GCGGGCTCAT TAGCAGCGCC AATGGAAATC ATTGAAGAGC GCACTATCGG ACCAAGCCTA
GGCGCTGAAA ACATTGAAAA AGGTTTTAAG TCCCTCTTAA TTGGCTTTGC TGCTATCGCA
ATTTCCATGA TGGCGTACTA CCTCTTGTTT GGAGCTTTCT CTGTAGTGGC GCTTGCAGTA
AATCTGCTCT TACTCATCTC TGTGCTATCT ATGTTGCAAG CCACTCTCAC GTTGCCAGGT
ATTGCTGCAA TGGCCTTGGC GCTAGGTATG GCGATTGACT CGAACGTATT GATTAATGAA
CGCATTCGCG AAGAGTTACG CAATAGCGCC TCTCCTCAAG CAGCTATCGC CGTAGGTTTT
GACAAAGCCT GGGCAACGAT TTTGGACTCC AACGTAACTA CATTGATTGC TGGTTTAGCG
TTGCTGGCCT TCGGTTCAGG CCCTATTAAA GGTTTTGCGG TGGTTCACTG CCTAGGTATT
CTGACTTCAA TGTTCTCCGC AGTCTTTTTC TCACGCGGTC TTGTCAATCT CTGGTACGGC
AGACATAAGA AGATCCAAAA ACTCACTATC GGCCAAGTTT GGCGCCCACA GGAGAAATAA
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| Protein sequence | MNRYPLWKYL VIAVALLIGG LYSLPNFYGE APAVQVSSTK PTIKVDFATQ SRVEKILTEA
NINNTGVFFE VAGNVGSIKV RFDNTDIQLR ARDLLQQKLN VDQNDPNYTV ALNLLSNTPG
WLNAMNALPM PLGLDLRGGV YFLLQVDMKG AVQKKVTSLA TDIRGQLRDK NIRHQGIERG
ADFISINFGS TADAEATRSV LMTAQPELIW QVKPTGLSPK VVGEFKSTAL KEIHDNAVKQ
NIITLNKRVN ELAVKEPVIQ QQGAERIVVQ LPGVQDTARA KDIIGRTATL ESRLADPLVT
TIAIGETPPP GMDTFRFGEN RLGVFKKSVI FSGDRITDAS AGFDQNQRPS VNISLDAAGG
RVMQEVTREN IGKPMGMILF EKGKGEVLTI ATFQSEFSSK FQITGQPTTE SANDLALLLR
AGSLAAPMEI IEERTIGPSL GAENIEKGFK SLLIGFAAIA ISMMAYYLLF GAFSVVALAV
NLLLLISVLS MLQATLTLPG IAAMALALGM AIDSNVLINE RIREELRNSA SPQAAIAVGF
DKAWATILDS NVTTLIAGLA LLAFGSGPIK GFAVVHCLGI LTSMFSAVFF SRGLVNLWYG
RHKKIQKLTI GQVWRPQEK
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