| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_1493 |
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| Symbol | |
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| ID | 6183733 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010531 |
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| Strand | + |
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| Start bp | 1293589 |
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| End bp | 1297728 |
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| Gene Length | 4140 bp |
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| Protein Length | 1379 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 641672027 |
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| Product | membrane protein-like protein |
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| Protein accession | YP_001798199 |
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| Protein GI | 171464086 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3164] Predicted membrane protein |
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| TIGRFAM ID | [TIGR02099] conserved hypothetical protein TIGR02099 |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 63 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTCCGC CTCGCCTTAA AAGCTTGCTT GCTAAACGCC CCCAAGGTTC GAGTCGAGCT
TGGCGTAAGC GTGTCCTGAT TTTGACCGGG GTTGTTTTAG CCTTTTTTGT ACTCGTACAT
GTGGGCGTCC GGTTTGTCCT TTGGCCACAA ATCGAGAAAT CTAAATCCTC TGTTGAAAGA
CTCATTAGCG CCCGAATTGG CGCCGATGTT TCAATGGACT CATTGCAAGT GTCATGGACT
GGCATAAGAC CTAATTTTGA AATTGAGGGT CTACGTTTTA ATGACCCAGA TAAAACAAAG
TCGCTTTTAT CTATTCAAAA AATTAATGGG CAATTAGGCT GGTCTTCTTT TTATCATCTG
GCTCCATTTT TTCATGAACT CAATTTTGAG GGCGCCGAAA TTTATGCCCA GCGTAATAGC
AAAGGCGTTA TTACTATTGC TGGCATCTCA ATAGATGGTC AATCCAATGA CTATTCAGCA
GAGAACTGGC TCTTCTCTCA AAATGAAATT CGAGTAAACG ATGTCAAATT ATTCTGGAAT
GATCAGCTAA AGAAGAAGGC CACTACATCA GTAGATATTC AGAGCCTCTC TCTTAGCAAT
GGCATTCGCA ATCACAAAGG CTCCATCAGT GCGACAACGC CCTGGACCAA AGGCCCCTTG
TTGCTTAATA TCGATTTAGC GCATCCCATC GGAGGCCAGG CTGGCAACTG GCGCGACTGG
ATTGGCACCA TTTCCTGGAA TTTAAATGCA CTCGAGCTTG GTCAAATTGC TAACGAGTTT
TCCCTCTCAT TAAATACCCT AGAGGGAGTC TTGAGCTCCA ATGGAAAAAT AAAAATCGAC
AACGGTAAGC CTGATGGTGG AGAAATTTAT CTTGCGGCCG ATGACTTAAC AATCCAACTA
TCCAAGGATG AAGATGCAAT TGCTCTTGGA AGACTGGAAA CGAATTTGGT TCAAAAAACC
GATAGCGGCA TGATTTCTGT CACGACCAAA ACATTTGGAT GGCGTGATAT AGAAAGCTCT
AAAACCACTC CTTTGGAAAA TTTAAGTCCC ATGACGTTCC GCTGGAGGCC ACCAGCTAAG
GATGAGGAAA TTAAAGAATT TGGTTTTTCT TCACCAAAAA TTTTGGTGGA AGATGTTGCC
TTATTTGCCT TAAATCTTCC GCTATCTAAA AAAGTACACC AACGGATCAA AGCCTCTAAA
GCCGATGGGG AACTTCAAGA TCTGGACATC AATTGGTCTG AAAGCAAATC CCCTTTATCC
GCCCTAAATA TCCCCGGTGG ATGGTTTAAG TCAAACAAGG TGGACTTTAC CGTGAGCGCC
AAGCTGATTG ATTTAAGTTT TGTTGGCATC AACAAGTCAA TACCTTCCGT TTCTAAGCTA
TCAGGATTTT TGACTGCAGA CCAAACCAAG GGTAGCTTTT CGATTCAATC CAATAATATT
GAACTTGAAC TAAATGATTT ATTAGTAGAC CCCAAAATAA AACTTGATAA GGCCGGTGGC
CAAATTACAT GGTCCAAGCA AAAGGGGAAC TGGGTTATCA ACGCAAAACA GTTGGCGCTG
AGCAACCCCG AGATTTCCAC AACACTTAAC CTCAACTACA TCATTGGTGA GGCCAAAAAG
CCTGACTATA TGACTCTAGA TATGGACTTT GCACAAGCCA ATCTAAAAAC TGCTTATCGG
TATTTGCCAG TTGGCATGAG TGGTGAAGCC AAAACTTATT TAAGCAAGGC ATTTGATGCT
GGAGTTATCA AAAAGGGAGC TCTACACATT AAAGGCGACC CCAATGAAGT ACCTTTCTCA
AAAGCAGGCA CAGGAGAATT CACGCTCAAT CTCCCTATCG TTGGAGCAAC CTTCAGTCCA
GCGCAAACCT CATCACCCTC ACAAGGCGTT TGGCCCTCAT TTAATAATGT CAATGGCGCT
ATTAATATGC AGAATGCCAA CTTCACGGTG GATATAGATC GGGCAAGTTA TAAACAAGTT
GCCCTAAGCA AATTTCATGC AGAGATTCCG AGTGTTAGCG CAAAGCAATT GATGCTAACA
GTGAATGGCG AAGCGCAAGG TTATGCCCCG CAATTGCTAG ACTATTTATT TGCTTCACCC
GTTGGTAAAA AACAGATTGA GCTCGAGAAA AACCTCAAAA TAACAGGGCA TACCAACTTA
AATTTGGGCT TGAAGATTCC CCTGACCGGT GGCGGAGATG TCAATACCAA CATTCAATTA
AGTTTCCCCG GCAACATGGT CCAATGGGCT GACCTGCCAC CCTTTGAAAA TCTCAAGGGA
AAAATTCGCA TTACAGAAGT AAATCCAGAA TTCGAAGACA TTACCGCCAA CTTCCTTGGT
GGCGCCATCC AAATTTCCAA CTCGGATCCC AAGCAAAGTA GCCAAAACTA CAATATCTCA
GGGGATATTT CAGCGAAATT TATTAAGGAT TATCTTGCCA ATGATCCTGC AATACAGGCA
TTTCCGATCT TGCAAGCAAT GAGTGGTGTC GCTAAATATG ATGGCGTAAT TAGTTTTACT
AAAGACAATA GTGAAACCAG TCTGAAAATT GATATGCGTG ACTGGGGCAG CTCTGCTCCC
GCACCCCTTA AAAAGCAAGC TGGAACTTCG ATGTTCGGCG AGCTAAATCT CAAAACTTTT
GCAAAATCCA AAGCGAATTC AAGTCGCTTT TCGTGGAATG GAAAAATTGG GGACGCTTAC
TTTATTCAGG GCGAGATAAT TAACGATGGC ACTCTTCGTC ATACAGTAGG CATTGGAGCT
TCCGCCATTC CTCCACAGCA AGGCTTCCAA CTTAATCTTG TAAGCAATGA GCTAAATATA
GATATATGGC AAGAATTTTT AAACCCTAAA AACAGAAAAC AGCCAACTCC AAACTTAAAC
ACAAATGCAG CCAGCAATAT CCAGGTTATA GCGCAGGTAA AGCAATTAAC TTTATTTGAT
CGAATATGGC AAGACATCAA CCTGGCGGCA ACCAATAAAA ATTCTACCTG GCAGCTTCGC
TTGAGAGGAT CTCCTCAGGT GGCTGGCAAT ATTCAATATC AACCCGCCCA ATCTCAGGCT
GGCGACCTTA TTAGTGGGCG GCTTGTGCGC CTCAAGATTC CCGAAGAAGT GGTTGCTCCA
CCTCCCCCTA CAAAGCAGAC ACAAAAAAAT ACAGCTAGCA AAAACAAGAT TGAACCAGGA
TCAATACCCA GCATTGATTT AATAATTGAT GACTTTGATT GGAATAAAGC CCAATTTGGC
CAGGTAAAAA TTAAAACCAA AACCACGGGC AACACCATCA ATATTGACTC TGTTCAATTT
AGTAACCCAC AAGGCAGCTC AACCACAACC GGTCGTTGGG TTGGAGGCAC ACAAAATGCA
CCCGCTCATA CCAACTTAAA TATTGACCTA GATATCAAAG ATGCTGGGCA AATTATTAGT
CACTGGACCA ATCAAAAGTC AGTAGAGGGT GGGCAAGGTA AATTCACAGT CAATGCAGAT
TGGGATGGAT CGCCTTTTAG CCCTCAATAC GACACACTTG CAGGCAAGGC AACATTAAAC
CTGGAAAAAG GTCGCCTCCT AGAGGTCAAT TCCAGCGGCG CAAAACTGCT TGATGTTCTG
AGTTTGCAAA GTTTATTTAA ATTTGCCACC TTAGATTTAA AGGGCAGCGT TGGCAATATT
GTTACCAAAG GAACTCCGTT TAACTCTATT GATGCCTCTT TTGATATTCA TGCTGGTGTA
GCTCAAACCA AACAATTTAA TATGGGCTTA GACCAAGCAC GTGTTGCAAT GTCGGGGCAA
ATTAACATCC CCAAACAAAC ACAAGATTTA TGCGTCACAA TTTTCCCAAC TATTGATGCT
ACAGCTGGCT CCTTAGCGGC ATTTGCCATT AACCCTATCG TAGGACTTGG AGCTTTGGTA
GGGCAGTATT TAATTACCAG CCAGATTAAC CGCAATCTAC AATCTGACTA TCTGGTACAG
GGATCCTGGG ATAACCCAGA AGTCATTCCT CTGGATCAGA AGGGTCAACC AATTGACTCC
AAAACTTTAG ATAAGATTCG CAGCAAAGAT TTACTGAAAG AACAAAGTAA GCTAGATAGC
GCCTCGGGAC CACAGAGCAA TCCAAGCAAT ACGAGCACTC CCAACAAAAT TTCTAACTAA
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| Protein sequence | MIPPRLKSLL AKRPQGSSRA WRKRVLILTG VVLAFFVLVH VGVRFVLWPQ IEKSKSSVER
LISARIGADV SMDSLQVSWT GIRPNFEIEG LRFNDPDKTK SLLSIQKING QLGWSSFYHL
APFFHELNFE GAEIYAQRNS KGVITIAGIS IDGQSNDYSA ENWLFSQNEI RVNDVKLFWN
DQLKKKATTS VDIQSLSLSN GIRNHKGSIS ATTPWTKGPL LLNIDLAHPI GGQAGNWRDW
IGTISWNLNA LELGQIANEF SLSLNTLEGV LSSNGKIKID NGKPDGGEIY LAADDLTIQL
SKDEDAIALG RLETNLVQKT DSGMISVTTK TFGWRDIESS KTTPLENLSP MTFRWRPPAK
DEEIKEFGFS SPKILVEDVA LFALNLPLSK KVHQRIKASK ADGELQDLDI NWSESKSPLS
ALNIPGGWFK SNKVDFTVSA KLIDLSFVGI NKSIPSVSKL SGFLTADQTK GSFSIQSNNI
ELELNDLLVD PKIKLDKAGG QITWSKQKGN WVINAKQLAL SNPEISTTLN LNYIIGEAKK
PDYMTLDMDF AQANLKTAYR YLPVGMSGEA KTYLSKAFDA GVIKKGALHI KGDPNEVPFS
KAGTGEFTLN LPIVGATFSP AQTSSPSQGV WPSFNNVNGA INMQNANFTV DIDRASYKQV
ALSKFHAEIP SVSAKQLMLT VNGEAQGYAP QLLDYLFASP VGKKQIELEK NLKITGHTNL
NLGLKIPLTG GGDVNTNIQL SFPGNMVQWA DLPPFENLKG KIRITEVNPE FEDITANFLG
GAIQISNSDP KQSSQNYNIS GDISAKFIKD YLANDPAIQA FPILQAMSGV AKYDGVISFT
KDNSETSLKI DMRDWGSSAP APLKKQAGTS MFGELNLKTF AKSKANSSRF SWNGKIGDAY
FIQGEIINDG TLRHTVGIGA SAIPPQQGFQ LNLVSNELNI DIWQEFLNPK NRKQPTPNLN
TNAASNIQVI AQVKQLTLFD RIWQDINLAA TNKNSTWQLR LRGSPQVAGN IQYQPAQSQA
GDLISGRLVR LKIPEEVVAP PPPTKQTQKN TASKNKIEPG SIPSIDLIID DFDWNKAQFG
QVKIKTKTTG NTINIDSVQF SNPQGSSTTT GRWVGGTQNA PAHTNLNIDL DIKDAGQIIS
HWTNQKSVEG GQGKFTVNAD WDGSPFSPQY DTLAGKATLN LEKGRLLEVN SSGAKLLDVL
SLQSLFKFAT LDLKGSVGNI VTKGTPFNSI DASFDIHAGV AQTKQFNMGL DQARVAMSGQ
INIPKQTQDL CVTIFPTIDA TAGSLAAFAI NPIVGLGALV GQYLITSQIN RNLQSDYLVQ
GSWDNPEVIP LDQKGQPIDS KTLDKIRSKD LLKEQSKLDS ASGPQSNPSN TSTPNKISN
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