Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnec_1482 |
Symbol | |
ID | 6183335 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
Kingdom | Bacteria |
Replicon accession | NC_010531 |
Strand | + |
Start bp | 1281134 |
End bp | 1281952 |
Gene Length | 819 bp |
Protein Length | 272 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 641672016 |
Product | 3-methyl-2-oxobutanoate hydroxymethyltransferase |
Protein accession | YP_001798188 |
Protein GI | 171464075 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0413] Ketopantoate hydroxymethyltransferase |
TIGRFAM ID | [TIGR00222] 3-methyl-2-oxobutanoate hydroxymethyltransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 0.4922 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 70 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGGTTACT TACAAGGCGA CAAGCCAATC ACAGTTACCA AGCTCCTCGC AATGCATGCT GAGGGTGAAA AAATTTCTAT GCTCACAGCA TATGATTCGA CCATGTCCGC GCTGCTAAAC CGTTGCGGGG TTGAAACTAT TTTGGTTGGA GACTCTCTTG GCAATGTGAT TCAAGGACAC TCCAGTACAA CACCAGTTAC TGTGGAACAG ATGGCCTATC ACACCGAGTG TGTGGCTCGC GCCAATACTC ATGCCTTTTT AATTGCCGAT CTACCTTTTG CGAGTTATGG AGATCCAATA CAAGCACTAA AGTCCTCCGC TCAATTGATG CATGCTGGCG CAGATATGGT CAAACTTGAA GGTGGTGATG ACTGGCAAGT GGATGTTATT CGTCATTTAG TCGGGCGTAG TGTTCCCGTA TGCGCACACT TGGGCTTATT GCCACAGTCC GTTCATGTCC TAGGTGGTTA TAAGGTACAA GGAAAATCAA AAGACGCTGC CAGCGTTATG TTTGAGCAAG CGCTCGCTTG TCAAGAAGCT GGCGCGCAAA TGATTGTACT TGAAGCCATT TCCTCATCAC TGGGCGAAAA AATTACTGCC GAACTACATA TTCCAACAAT TGGTATTGGC GCAGGGCCAA ATTGCTCTGG TCAAGTATTG GTACTACAAG ATATGTTAGG CATTAGCCCT GGAAAGGCGC CTAAGTTTGT CAAAAACTTT ATGGACGGCC ACCACTCAGT AGAAGCCGCC ATTAAGGCTT ATGTGCGTGA AGTGAAGTCC GGGAAATTCC CTGGACCAGA GCATGGCTTT GCCGGCTGA
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Protein sequence | MGYLQGDKPI TVTKLLAMHA EGEKISMLTA YDSTMSALLN RCGVETILVG DSLGNVIQGH SSTTPVTVEQ MAYHTECVAR ANTHAFLIAD LPFASYGDPI QALKSSAQLM HAGADMVKLE GGDDWQVDVI RHLVGRSVPV CAHLGLLPQS VHVLGGYKVQ GKSKDAASVM FEQALACQEA GAQMIVLEAI SSSLGEKITA ELHIPTIGIG AGPNCSGQVL VLQDMLGISP GKAPKFVKNF MDGHHSVEAA IKAYVREVKS GKFPGPEHGF AG
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