Gene Pnec_1482 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnec_1482 
Symbol 
ID6183335 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. necessarius STIR1 
KingdomBacteria 
Replicon accessionNC_010531 
Strand
Start bp1281134 
End bp1281952 
Gene Length819 bp 
Protein Length272 aa 
Translation table11 
GC content47% 
IMG OID641672016 
Product3-methyl-2-oxobutanoate hydroxymethyltransferase 
Protein accessionYP_001798188 
Protein GI171464075 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0413] Ketopantoate hydroxymethyltransferase 
TIGRFAM ID[TIGR00222] 3-methyl-2-oxobutanoate hydroxymethyltransferase 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value0.4922 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones70 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGTTACT TACAAGGCGA CAAGCCAATC ACAGTTACCA AGCTCCTCGC AATGCATGCT 
GAGGGTGAAA AAATTTCTAT GCTCACAGCA TATGATTCGA CCATGTCCGC GCTGCTAAAC
CGTTGCGGGG TTGAAACTAT TTTGGTTGGA GACTCTCTTG GCAATGTGAT TCAAGGACAC
TCCAGTACAA CACCAGTTAC TGTGGAACAG ATGGCCTATC ACACCGAGTG TGTGGCTCGC
GCCAATACTC ATGCCTTTTT AATTGCCGAT CTACCTTTTG CGAGTTATGG AGATCCAATA
CAAGCACTAA AGTCCTCCGC TCAATTGATG CATGCTGGCG CAGATATGGT CAAACTTGAA
GGTGGTGATG ACTGGCAAGT GGATGTTATT CGTCATTTAG TCGGGCGTAG TGTTCCCGTA
TGCGCACACT TGGGCTTATT GCCACAGTCC GTTCATGTCC TAGGTGGTTA TAAGGTACAA
GGAAAATCAA AAGACGCTGC CAGCGTTATG TTTGAGCAAG CGCTCGCTTG TCAAGAAGCT
GGCGCGCAAA TGATTGTACT TGAAGCCATT TCCTCATCAC TGGGCGAAAA AATTACTGCC
GAACTACATA TTCCAACAAT TGGTATTGGC GCAGGGCCAA ATTGCTCTGG TCAAGTATTG
GTACTACAAG ATATGTTAGG CATTAGCCCT GGAAAGGCGC CTAAGTTTGT CAAAAACTTT
ATGGACGGCC ACCACTCAGT AGAAGCCGCC ATTAAGGCTT ATGTGCGTGA AGTGAAGTCC
GGGAAATTCC CTGGACCAGA GCATGGCTTT GCCGGCTGA
 
Protein sequence
MGYLQGDKPI TVTKLLAMHA EGEKISMLTA YDSTMSALLN RCGVETILVG DSLGNVIQGH 
SSTTPVTVEQ MAYHTECVAR ANTHAFLIAD LPFASYGDPI QALKSSAQLM HAGADMVKLE
GGDDWQVDVI RHLVGRSVPV CAHLGLLPQS VHVLGGYKVQ GKSKDAASVM FEQALACQEA
GAQMIVLEAI SSSLGEKITA ELHIPTIGIG AGPNCSGQVL VLQDMLGISP GKAPKFVKNF
MDGHHSVEAA IKAYVREVKS GKFPGPEHGF AG