| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_1454 |
|---|
| Symbol | |
|---|
| ID | 6183430 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010531 |
|---|
| Strand | - |
|---|
| Start bp | 1254363 |
|---|
| End bp | 1255556 |
|---|
| Gene Length | 1194 bp |
|---|
| Protein Length | 397 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 641671991 |
|---|
| Product | fatty acid desaturase |
|---|
| Protein accession | YP_001798163 |
|---|
| Protein GI | 171464050 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1398] Fatty-acid desaturase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 66 |
|---|
| Fosmid unclonability p-value | 0.843148 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGAATACAG CTCCAGGTTT TGATTTATTC CTCCACTGGC TTGCCAATGG ATATTTAGAT
TGGTCATGGT GGCAGATTGC TGTTTTCACC TTGGTTGTTA CACACATCAC GATTGCAGCA
GTTACTATTT TCTTGCACCG CTGCCAAGCG CACCGCGCTT TAGAGTTGCA CCCAATTATT
TCTCATTTCT TCCGTTTTTG GCTTTGGCTA ACAACTGGCA TGATCACTAA AGAGTGGGCC
GCGATTCACC GTAAGCATCA CGCCAAATGT GAGACTGTAG ATGATCCACA TAGCCCACAG
ATTTTAGGAA TTAAAACTGT TTTGTCTCGC GGTGCTGAGC TGTATAAAAA AGAAGCCGCC
AATCAAGAGA CGCTCGATAA GTTTGGTCAC GGCACTCCAG ATGATTGGGT TGAGCGCAAT
ATCTACTCCA AGTTCTCTTG GCAGGGCGTT ACCATCATAC TCATCATTGA TGTGTTTTTA
TTTGGTGCAA TTGGTCTAAC GGTCTGGGCA GTGCAAATGT TGTGGATTCC GATTACTGCA
GCAGGGATCA TTAATGGTAT TGGCCACTTC TGGGGTTATC GCAACTTTGA CTGTGAAGAT
GCCTCTAGAA ATATTGTTCC TTGGGGTATA TTAATTGGTG GCGAAGAGCT ACATAACAAT
CACCACACCT TTGCTACCAG TGCCAAGTTA TCAAACAAAT GGTATGAGTT TGATATTGGT
TGGATATATA TCCAGATCAT GAGTGCAGTC GGTTTGGCTA CTGTAAAGAA GACACCGCCA
AAACCAGTGT TGAGTGACCT GCGTCCCGCG GATCAAAGTA CTCTAGAGGC CATTATTGCA
AATCGTTACG AAATCATGGC CCGCTATAGC AAGACATTGC GCAGTTTCTT TAGCAATGAA
GTGCAGCACA TGCAGGTCTT GGCAACGCAT TTAAGCGATG CCCGTACTTG GCTAGCCAAA
GACGAGTCGC GCTTGACTGA GCAAGAGAAA TTAAAGCTTG AAGAGTTAAT GGCAAGTAAT
GCCCAGTTGC GCAAGATGAT TGAAATGCGT CGTGAGTTAC AAGATATTTG GAGCCGTTCT
TCGGCTACAA AAGAACAATT GCTATCGCAG TTACATGCTT GGTGTCAGCA TGCGGAAGAA
AGTGGTTTGA CGAGCTTGCG CGAGTTCTCG CTGAGATTGC GTCGCTACGC ATAG
|
|---|
| Protein sequence | MNTAPGFDLF LHWLANGYLD WSWWQIAVFT LVVTHITIAA VTIFLHRCQA HRALELHPII
SHFFRFWLWL TTGMITKEWA AIHRKHHAKC ETVDDPHSPQ ILGIKTVLSR GAELYKKEAA
NQETLDKFGH GTPDDWVERN IYSKFSWQGV TIILIIDVFL FGAIGLTVWA VQMLWIPITA
AGIINGIGHF WGYRNFDCED ASRNIVPWGI LIGGEELHNN HHTFATSAKL SNKWYEFDIG
WIYIQIMSAV GLATVKKTPP KPVLSDLRPA DQSTLEAIIA NRYEIMARYS KTLRSFFSNE
VQHMQVLATH LSDARTWLAK DESRLTEQEK LKLEELMASN AQLRKMIEMR RELQDIWSRS
SATKEQLLSQ LHAWCQHAEE SGLTSLREFS LRLRRYA
|
|---|
| |