| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_1433 |
|---|
| Symbol | |
|---|
| ID | 6183482 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010531 |
|---|
| Strand | - |
|---|
| Start bp | 1230651 |
|---|
| End bp | 1233017 |
|---|
| Gene Length | 2367 bp |
|---|
| Protein Length | 788 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 641671973 |
|---|
| Product | UvrD/REP helicase |
|---|
| Protein accession | YP_001798145 |
|---|
| Protein GI | 171464032 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0210] Superfamily I DNA and RNA helicases |
|---|
| TIGRFAM ID | [TIGR01075] DNA helicase II |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 56 |
|---|
| Fosmid unclonability p-value | 0.189419 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTACTCAG ACTTGCTCGC GAACCTCAAT CCAGAACAGC GCGAGGCAGT GACCCTCCCG
CCCGTCAATG AAAATGGCCA ATCCCAGTCA GCCTTGATTT TGGCAGGGGC AGGGGGTGGC
AAGACCCGCG TCCTCACCAC CCGTATAGCG TGGTTGATTC AGACTGGCCA GGTGTCCCCA
ATAGGCGTAC TAGCGGTGAC CTTTACCAAT AAAGCTGCCA AAGAGATGAT GTTGCGCTTA
AGCGCCATGC TGCCAATTAA TACCCGTGGA ATGTGGATTG GTACTTTTCA TGGGCTTTGT
AACCGTTTAT TGCGTGCCCA CCATAAAGAG GCGGGCCTGC CCTCAACTTT CCAGATTTTG
GATACCCAAG ATCAACTCTC AGCGATTAAA CGTTTGTTGA AGGGTTTAAA GGTTGATGAT
GAGAAATATC CTGCTAAGCA ATTGCAGTAC TTTATTGCCC ACGCTAAAGA GCGCGGACAG
CGTGCAAAAG ATTTATCGGT AGGCGATGAC TTTCAGGCCA AGATGGCGCA GCTCTATGCA
GCTTACGATG AGCAATGTCA GCGTGAAGGC GTAGTCGATT TTGCTGAGCT CTTATTACGT
AGCTATGAAT TGCTCAAACA TAGCGAGGCT ATTCGCACTC ATTACCAGGA GCGCTTCCGC
CATATCTTGA TTGACGAGTT TCAAGATACG AATGCCTTGC AATATGCATG GCTCAAATTA
TTGTCGGGTC ATGATGCTAG CAGTATTAAT GTGAGCGGTA TGGGTAGTAG TTCCGTATTT
GCGGTAGGCG ATGACGACCA AAGTATTTAT GCTTTCCGCG GCGCTGATGT TGAAAACATG
CGCTTGTATG AAAAGCAATA CCACCCATTG ATGGTGAAGT TGGAGCAGAA TTATCGTTCA
CACGGCCACA TTCTAGATAC TGCAAATCAT TTGATTGCTA ACAACTCAGA GCGTCTTGGT
AAAAACCTCC GCACCGATGC CGACCATGGC GAGCCAGTCC GTATCTATGA GGCGCCTAGC
GATCACGCTG AGGCCGCTTG GTTGGTTGAC GAGATTAAAG CACTGGTGAA CAGCGGCATC
AAGCGTACCG AAGTGGCCTT ACTTTATCGC AGCAATGCCC AGTCACGCAT CATTGAGCAC
GCACTATTTT CTGCGGGCAT TCCATATCGT GTATATGGTG GTTTACGCTT TTTCGAGCGT
GCTGAAATTA AACATGCACT GGCTTATTCG CGCTTGCTTG AAAATCCAAA TGACGACACC
TCATTCTCTC GCGTGGTTAA TTTTCCAACT CGTGGAATTG GCGCGAGATC AATTGAAGTC
TTGCAAGATG CTGCCAGAGC ACAGCAATGT TCCTTGTATC TTGCAGCCTC TACATTAGAA
GGTAAGGCTG GCGCAGCGCT CGGTGGATTT GTGCGTTTAG TGGATCACAT GCGTGAAGCA
ACGCGCCATA ATACTTTGCC AGAAACGGTT GAGTTTGTTA TTCAGCACAG TGGTTTGATT
CAGCACTATC TCTCTGAGCG CGAAGGACAA GATCGCGTAG AGAACTTGCA GGAATTAATT
AATGCAGCAA CTGCATTTAT TGCTGAAGAG GGATATGGTC AAGATGCGGC TGCTGCAATG
CTGTCAGGCG AGAATGCCCC TGGCGTTGCA GAGGTTTCTC CACTAGCTGC ATTCCTGTCG
CACGCTTCCT TGGAAGCTGG CGATAACCAG GCACAGGCTG GTCAAGATGC TGTGCAGCTG
ATGACTGTCC ATTCAGCTAA AGGGCTGGAA TTCACCTCTG TCTTCATTAC TGGCCTCGAA
GAGGGTTTAT TTCCGCATGA GAACAGCGTT AATGAACAGA ACGGTCTAGA GGAAGAACGT
CGCTTGATGT ATGTCGCAAT TACTCGCGCC AAAGAGCGTT TGTATTTATC GCACACCCAA
TCACGCATGT TGCACGGCCA GGTACGCTAC AACATGCCTT CGCGCTTCTT AGAAGAATTG
CCATCAGATT CATTGAAGTG GCTCACACCC AAAGCGAGAG ATGCTCGTTG GGGTGGTGGT
AATTTAAGAT CAGGATCAAC TCGGCAGGAT GGCTATACCC GTCAGCGCGA ATATGAGTCG
AATGACTTTT TTGATTCAGG ATCTGATCAC CAGAGGCCTG CTAAGCGTGT CGGCTCAGCT
TCGATGGAAG TAAAAAGATT AATCTCTCCT CCGCGGGGAA ATTATCCATT CACCATTGGA
CAAAATGTGT TTCATACCAA ATTTGGTGAG GGGCACGTAA CTGGCTTAGA GGGTGTTGAT
GCTGACGCAA GAGCACAGGT GAATTTCAAA CGTCATGGCA TCAAATGGTT GCAACTAAGT
ATTGCGAAGC TTGTGGCGAT TGATTGA
|
|---|
| Protein sequence | MYSDLLANLN PEQREAVTLP PVNENGQSQS ALILAGAGGG KTRVLTTRIA WLIQTGQVSP
IGVLAVTFTN KAAKEMMLRL SAMLPINTRG MWIGTFHGLC NRLLRAHHKE AGLPSTFQIL
DTQDQLSAIK RLLKGLKVDD EKYPAKQLQY FIAHAKERGQ RAKDLSVGDD FQAKMAQLYA
AYDEQCQREG VVDFAELLLR SYELLKHSEA IRTHYQERFR HILIDEFQDT NALQYAWLKL
LSGHDASSIN VSGMGSSSVF AVGDDDQSIY AFRGADVENM RLYEKQYHPL MVKLEQNYRS
HGHILDTANH LIANNSERLG KNLRTDADHG EPVRIYEAPS DHAEAAWLVD EIKALVNSGI
KRTEVALLYR SNAQSRIIEH ALFSAGIPYR VYGGLRFFER AEIKHALAYS RLLENPNDDT
SFSRVVNFPT RGIGARSIEV LQDAARAQQC SLYLAASTLE GKAGAALGGF VRLVDHMREA
TRHNTLPETV EFVIQHSGLI QHYLSEREGQ DRVENLQELI NAATAFIAEE GYGQDAAAAM
LSGENAPGVA EVSPLAAFLS HASLEAGDNQ AQAGQDAVQL MTVHSAKGLE FTSVFITGLE
EGLFPHENSV NEQNGLEEER RLMYVAITRA KERLYLSHTQ SRMLHGQVRY NMPSRFLEEL
PSDSLKWLTP KARDARWGGG NLRSGSTRQD GYTRQREYES NDFFDSGSDH QRPAKRVGSA
SMEVKRLISP PRGNYPFTIG QNVFHTKFGE GHVTGLEGVD ADARAQVNFK RHGIKWLQLS
IAKLVAID
|
|---|
| |