| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_1422 |
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| Symbol | |
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| ID | 6184002 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010531 |
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| Strand | - |
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| Start bp | 1218631 |
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| End bp | 1220532 |
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| Gene Length | 1902 bp |
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| Protein Length | 633 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 641671963 |
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| Product | deoxyxylulose-5-phosphate synthase |
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| Protein accession | YP_001798135 |
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| Protein GI | 171464022 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.205576 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 74 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACATTAC ATTCCGTTAA CTCCCCTGAC GATCTCAAAA AACTCTCGCG CGAAGAGCTG
CCGGCTTTAG CGGATGAGTT GCGTGAGTTT GTTTTAGATT CTGTTTCTAA AACAGGCGGA
CACCTCTCTT CGAATTTGGG AACAGTAGAG TTATCTATCG CATTACATTA CGTTTTTGAT
ACGCCGCAAG ATCGCATTGT GTGGGATGTA GGCCACCAAA GTTACCCGCA TAAGATTTTG
ACAGGCCGTC GTGAGCGTAT GAATACCTTG CGCCAGTACA AAGGCCTCTC GGGGTTCCCG
CATCGCTCTG AGAGCGAGTT TGATGCATTT GGTACTGGTC ACTCATCTAC TAGTATTTCG
GCTGCAATGG GTATGGCCCG AGCGTTTCAA ACTAAGGGTG AGAGGCATGT GGCCGTAGCT
GTCATTGGCG ATAGCGCTAT GACAGGCGGT ATGGCTTTTG AGGCGATGAA CAATGCTGGT
GTTTACGACG ACTTACCGCT CGTAGTGATT TTGAATGACA ACGATATGTC GATCTCCCCA
GCGGTGGGCG CGCTCAATCG CCACCTGGCT AGATTGCTTA GCGGTAATAT TTATTCAGCT
ACCAAAAAAA GCATTGATAG CGTTTTATCG ATTGCGCCAC CCTTACGTGA GTTTGCAAAG
CGCCTTGAGG ATCATGCCAA GGGCATGGTT TCTCCATCGA CCATCTTTCA GGAATTTGGC
TTCAATTACT TTGGCCCAAT TGATGGCCAT GATTTAGATG CTTTGATTCC AATGCTGCAG
AACGTGCGCC GCCTGGCGCT TGAGGGTCGT GGCCCGCAGT TCTTGCACGT CGTGACAAAG
AAAGGTCAGG GTTACGAGTT GGCTGAGGCA GATCCGGTGC TATATCATGG GCCAAGTAAA
TTTAACCCTG AAGAGGGCGT CAAAAAATCC GTTGCTAGCA AGAAAACATT CACGCGAGTT
TTTGGTGAAT GGTTGTGCGA TATGGCGCAT GCCGATCCAT TATTGGTGGG CATTACTCCC
GCCATGCGTG AAGGCTCTGG CTTGGTTGAA TTTGAAAAGA ATTTTCCAAA GCGTTATTAC
GACGTAGGTA TTGCCGAGCA GCATGCGGTA ACTTTTGCGG CTGGCATGGC CTGCGAGGGT
ATGAAACCAG TAGTAGCGAT TTATTCCACC TTCTTACAAC GTGCTTATGA TCAGTTAATT
CATGATGTAG CGTTACAAGA TTTACCCGTC TTATTTGCAC TCGATCGCGC AGGCTTGGTA
GGTGCCGATG GTGCTACGCA TGCTGGTGCA TACGATATCT CCTTCTTGCG TTGCATTCCA
AATATGTTGG TGCTAACTCC AGCGGACGAA GCTGAGTGCC GCGACTTATT AACTACTGCA
TTCCATCAGC CACACCCAAG CGCAGTTCGC TACCCACGTG GCGCTGGCGT TGGCACCATT
CCCTCTAAAG AGTTGCGGAC GCTACCATTG GGCAAAGGCG AAGTTCGTCG TAAATCCAGT
GCGCCAGCTG GTCAACGGGT GGCAATTTTA TCTTTTGGCA CTTTGCTTTA CTCTGCCCTG
GAAGTTGCTG AGGGTATCGA TGCAAGTGTT GCCAATATGC GTTTTGTTAA GCCGCTCGAT
GTGGATTTAA TACAATCTTT GGCTGCCGAT CATGATTATT TTGTGACGAT TGAAGATGGT
GCGATTGCTG GCGGCGCCAG TAGCGCTTGT TTAGAAGCCT TATCAAATCT TGGAATTAAT
AAGCCACTCT TACGGCTGGG TCTTCCGGAT GAATTTATTG AGCATGGCGA CTACAGTTTG
CTGATGACCA AGTGTGGCCT CGATGTAGAG GGCATTGCCA ATTCCATCAA ACAACGTTTT
CCAGCGATAT TGACCCAAAA TTCTGCGCTT GTAGGCAAAT AA
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| Protein sequence | MTLHSVNSPD DLKKLSREEL PALADELREF VLDSVSKTGG HLSSNLGTVE LSIALHYVFD
TPQDRIVWDV GHQSYPHKIL TGRRERMNTL RQYKGLSGFP HRSESEFDAF GTGHSSTSIS
AAMGMARAFQ TKGERHVAVA VIGDSAMTGG MAFEAMNNAG VYDDLPLVVI LNDNDMSISP
AVGALNRHLA RLLSGNIYSA TKKSIDSVLS IAPPLREFAK RLEDHAKGMV SPSTIFQEFG
FNYFGPIDGH DLDALIPMLQ NVRRLALEGR GPQFLHVVTK KGQGYELAEA DPVLYHGPSK
FNPEEGVKKS VASKKTFTRV FGEWLCDMAH ADPLLVGITP AMREGSGLVE FEKNFPKRYY
DVGIAEQHAV TFAAGMACEG MKPVVAIYST FLQRAYDQLI HDVALQDLPV LFALDRAGLV
GADGATHAGA YDISFLRCIP NMLVLTPADE AECRDLLTTA FHQPHPSAVR YPRGAGVGTI
PSKELRTLPL GKGEVRRKSS APAGQRVAIL SFGTLLYSAL EVAEGIDASV ANMRFVKPLD
VDLIQSLAAD HDYFVTIEDG AIAGGASSAC LEALSNLGIN KPLLRLGLPD EFIEHGDYSL
LMTKCGLDVE GIANSIKQRF PAILTQNSAL VGK
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