| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_1393 |
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| Symbol | |
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| ID | 6183714 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010531 |
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| Strand | + |
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| Start bp | 1194634 |
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| End bp | 1195533 |
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| Gene Length | 900 bp |
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| Protein Length | 299 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 641671938 |
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| Product | histone deacetylase superfamily |
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| Protein accession | YP_001798111 |
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| Protein GI | 171463998 |
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| COG category | [B] Chromatin structure and dynamics
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG0123] Deacetylases, including yeast histone deacetylase and acetoin utilization protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 84 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGAAAGCTT TCTACACCGA TCATTTTGTA TTGCCGCTGC CAGAGGGGCA TCGCTTCCCT
ATGGAGAAGC ATTCTCGCTT GCGCGATTTA GTCAGTAGCC AAGCAAGCAT AGAGCTAGTT
GAAGTGCCAC CCGCAACCGA TACCCAAATC CTATATGCGC ATGATCCCAG CTACCTCATC
AAAATAATCG ATGGAACTCT CTCAGCCCAA GAGCAAAGAG AAATTAGGTT TCCTTGGAGT
ACGCTGATGG TGGAGCGTTC ACGTCGCTCG GCAGGAGCTA CGGTGGCTGC AGCTAAAACA
GCTCTAAAAG AAGGTATTGC TAGCAATCTA GCTGGCGGCA CCCATCACGC CTATCGGGAT
GCTGGTAGTG GATTTTGCGT CTTTAACGAT TCCGCCATTG CCGATCGCAC TCTACAAAAA
GAGATTAGTG CATCTTTAAA AATTGCTGTA ATTGATTTGG ATGTTCATCA AGGCAATGGG
ACTGCATCGA TTTTGCAAAA TGATGATTCT ATTTTTACCC CATCCATTCA TGGAGAGAAT
AACTTTCCCT TTAAGAAGGA GCAAAGTGAT CTTGATTTGG GTTTAACTGA TGGTTGCAAT
GACGAGATCT ACTTGCACTC ATTAAGCCAA TGCTTAGATC AACTTGACGC ACGCTTTAAG
GCCGATTTCT TGATCTTCTT GGCTGGTGCC GACCCACATG AGGGAGATTG CCTAGGAAGA
TTGAAGATCA GCAAAAAAGG AATGCGTCTT CGAGATGAGC TAGTGTTTCA ATACGCCTTA
GATAGACAAC TTGCAGTTGC CTTCTCAATG GCGGGCGGCT ATGGCAAAGA AATTGAATCT
ACAATAAACA TTCACTTTCA GACCATCAAA ACCGCCCTGC AATTTCAGCA ATGCTATTAA
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| Protein sequence | MKAFYTDHFV LPLPEGHRFP MEKHSRLRDL VSSQASIELV EVPPATDTQI LYAHDPSYLI
KIIDGTLSAQ EQREIRFPWS TLMVERSRRS AGATVAAAKT ALKEGIASNL AGGTHHAYRD
AGSGFCVFND SAIADRTLQK EISASLKIAV IDLDVHQGNG TASILQNDDS IFTPSIHGEN
NFPFKKEQSD LDLGLTDGCN DEIYLHSLSQ CLDQLDARFK ADFLIFLAGA DPHEGDCLGR
LKISKKGMRL RDELVFQYAL DRQLAVAFSM AGGYGKEIES TINIHFQTIK TALQFQQCY
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