Gene Pnec_1386 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnec_1386 
Symbol 
ID6183409 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. necessarius STIR1 
KingdomBacteria 
Replicon accessionNC_010531 
Strand
Start bp1192163 
End bp1192576 
Gene Length414 bp 
Protein Length137 aa 
Translation table11 
GC content40% 
IMG OID641671931 
ProductDoxX family protein 
Protein accessionYP_001798104 
Protein GI171463991 
COG category[S] Function unknown 
COG ID[COG2259] Predicted membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value0.42391 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones82 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTTTAA TGTCTAAACC TTTAACATTG GTTGCCAGAA TTTTGATGGC ATCTATTTTT 
ATATCAGCCG GCTTTTCCAA AGTTTTGGGA TTCGATGGGG TTACTGCGTA TATTGCCTCT
AAAGGTTTGC CGTTGCTAAT GGTTATTGCT GGCCTTACTG TTGCCCTTGA AATTCTCGGT
GGTATTGCCA TCATTGTTGG CTTTAAGGCT CGTATCGCAG GTCTACTTCT AGGCTTATTT
TCTATCCTGG CAGCCTTTAT ATTCCATAAC TTCTGGGCAT TTCCTCCAGA GCAAGTCTAT
CTCCAAAATA TTATGTTTAT GAAGAATCTC AGCATAGCAG GCGGTTTATT TTTATTGGCG
GTCTTTGGGC CTGGTGGGTA TTTAATTGAT GGCAGAAATA CAGTCAAGAA ATAA
 
Protein sequence
MSLMSKPLTL VARILMASIF ISAGFSKVLG FDGVTAYIAS KGLPLLMVIA GLTVALEILG 
GIAIIVGFKA RIAGLLLGLF SILAAFIFHN FWAFPPEQVY LQNIMFMKNL SIAGGLFLLA
VFGPGGYLID GRNTVKK