| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_1378 |
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| Symbol | |
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| ID | 6183471 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010531 |
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| Strand | - |
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| Start bp | 1186845 |
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| End bp | 1188764 |
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| Gene Length | 1920 bp |
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| Protein Length | 639 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 641671925 |
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| Product | cytochrome c-type biogenesis protein CcmF |
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| Protein accession | YP_001798098 |
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| Protein GI | 171463985 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG1138] Cytochrome c biogenesis factor |
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| TIGRFAM ID | [TIGR00353] c-type cytochrome biogenesis protein CcmF |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 75 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTCCTG AGTTTGGGCA TTACGCATTG GTGCTGGCAC TTTGTATTGC TAGTATTCAA
GGGGTTTTGC CTTTGCTAGG CGCGCACTTT GGGCGCCGTG ATTGGTTGGC GTTAGCTAGG
TCCAGTGCGC AAACAGTTTT CTTATTGTTG GCGATTGCTT TCGGTATCTT GGCTTGGAGT
TTTTATGTCA ATGATTTTTC TGTGCTCTAT GTTGCTGAGC ACTCCAATTC GCAGTTGCCA
GTTATCTATC GATTAGGTGC GGTATGGGGT GGTCATGAAG GCTCGCTCTT ATTGTGGATC
TTCTTGCTTG CTACCTGGAC TATCTTGGTG GCACAACTTT CAAAAGCCTT AGATGACTTC
ATGGTGGCAC GCGTTATTGG TGTATTGGGG TTGGTTACCA GTGGTTTATT GCTATTTGTA
TTAACAACCT CAAATCCGTT TGAGCGTTTA TTGCCTGCTG CACAAGATGG TCGATCTCTG
AATCCACTTT TGCAAGACCC TGGCTTGGTA TTTCATCCGC CAATGCTTTA CATGGGTTAT
GTCGGCTTTT CTGTGGCCTT TGCTTTTGCC ATTGCATCAT TACTATCAGG CAGACTTGAT
GCTGCATGGG CGCGCTGGTC ACGCCCTTGG ACTACCGCTG CTTGGGTGTT CCTTACGCTC
GGTATCGCCC TTGGTTCGTG GTGGGCTTAT TACGAATTGG GTTGGGGTGG TTGGTGGTTT
TGGGATCCTG TAGAAAATGC CTCATTTATT CCTTGGCTCG TAGGTACAGC ATTACTGCAT
TCATTAGCCG TTACTGAAAA GCGTGGTGGC TTTAAGAGTT GGACCGTACT CCTAGCGATT
ACTGCATTCT CTTTATCGCT GCTCGGAACT TTCTTGGTTC GCTCAGACGT ATTAACCTCG
GTACATGCAT TTGCAACTGA TCCAAAGCGC GGTATTTTTA TTCTGATCCT CTTATCTTTG
GTGGTTGGTT CCTCACTATT ACTTTATGCT TGGCGTGCGC CAAAAAGTAC GATGGGTGGA
AAATTTAGCC TGAGCTCTAG GGAAATATTT ATCTTACTTG GAAATATTTT TCTGGTGGTT
TCTGCCGGAT CTGTTTTATT GGGTACGCTA TATCCATTGC TGATCGATGC CTTGCATCTC
GGCAAGATTT CAGTGGGCCC CCCCTATTTC AATAGCGTAT TTGTTCCCAT CATGGTTCCT
TTGCTGACAT TAATGGGTAT TGGCCCTTGG GCTAGTTGGA AGCAGAGTAA TTTGCTCGCC
ATCATCAAGC GTTTATGGCT AGCAGCTGCA GTGGCAGTGG TTGCAGGCAT TGCGATACCT
CTGATCATGG GTCAATTTAC GTGGCTTGCA GGTATGGGCT TTATGTTGGC TTTTTGGATC
ATTGCATCAG GTTGTATGCA AATCATTCGT CAAGCTAAAG CAGGTAAGCC AACGCGATCT
TTCATTGGTA TGCAGGTGGC GCATTTAGGT ATCGCAGTAT TTGTTATTGG CGTGACAATG
GTTGGCGCTT ACCAAGAAGA AAAGGATGTA CGCATGTCTG CTGGCGATAC AGTCACGGTT
GGCGGATATC AAATACAGCT TCAAAGTGTG AATGCGGAAC GTGGCCCAAA TTACCAAGCA
ATGCGCGGGA CATTCTTTCT ATCTAGGGAT GGCAGCCCTC AGATCAGTCT CTATCCCGAG
AAAAGAAGTT ATTTCTCGTC GACTATGCCA ATGACTGAGG CTGCGATTGA TGCAGGACTT
ACGCGGGATA TATATGTGTC GCTGGGCGAA GAGTTAGGCG ATCAGTCATG GGTCGTACGT
GTGTACTACA AGCCTTTTGT AGATTGGATT TGGGGCGGTT GCTTGTTAAT GGCCTTGGGC
GGTGTATTGG CGATGTCTGA TAAGCGTTAT CGATTTAAGC TAAAGATTAA GTTCGCATGA
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| Protein sequence | MIPEFGHYAL VLALCIASIQ GVLPLLGAHF GRRDWLALAR SSAQTVFLLL AIAFGILAWS
FYVNDFSVLY VAEHSNSQLP VIYRLGAVWG GHEGSLLLWI FLLATWTILV AQLSKALDDF
MVARVIGVLG LVTSGLLLFV LTTSNPFERL LPAAQDGRSL NPLLQDPGLV FHPPMLYMGY
VGFSVAFAFA IASLLSGRLD AAWARWSRPW TTAAWVFLTL GIALGSWWAY YELGWGGWWF
WDPVENASFI PWLVGTALLH SLAVTEKRGG FKSWTVLLAI TAFSLSLLGT FLVRSDVLTS
VHAFATDPKR GIFILILLSL VVGSSLLLYA WRAPKSTMGG KFSLSSREIF ILLGNIFLVV
SAGSVLLGTL YPLLIDALHL GKISVGPPYF NSVFVPIMVP LLTLMGIGPW ASWKQSNLLA
IIKRLWLAAA VAVVAGIAIP LIMGQFTWLA GMGFMLAFWI IASGCMQIIR QAKAGKPTRS
FIGMQVAHLG IAVFVIGVTM VGAYQEEKDV RMSAGDTVTV GGYQIQLQSV NAERGPNYQA
MRGTFFLSRD GSPQISLYPE KRSYFSSTMP MTEAAIDAGL TRDIYVSLGE ELGDQSWVVR
VYYKPFVDWI WGGCLLMALG GVLAMSDKRY RFKLKIKFA
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