| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_1371 |
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| Symbol | |
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| ID | 6182892 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010531 |
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| Strand | - |
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| Start bp | 1182487 |
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| End bp | 1183788 |
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| Gene Length | 1302 bp |
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| Protein Length | 433 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 641671921 |
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| Product | TRAP transporter solute receptor, TAXI family |
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| Protein accession | YP_001798094 |
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| Protein GI | 171463981 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2358] TRAP-type uncharacterized transport system, periplasmic component |
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| TIGRFAM ID | [TIGR02122] TRAP transporter solute receptor, TAXI family |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 70 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATTTCT TCAAAAGACA AATTTACAAC CCACTAGCTC TTGCAGCATC TTTTTTTGTG
CTGTTAGTTG TTCTGTTTGG GGTGTTATGG ATACTGGTTC CGCCACCGCC AAAGTCCATC
GAAATGGCCA CAGGTTTTCC TACGGGGCTG TATTACCAAT TCGGAGAGCG TCTTAAGACA
GAGCTGTCTC AGGATGGCGT AAATCTAAAG GCACGCTCTA CTGGCGGGAC TATTGATGAT
CTTGGCCTTC TGAATGATCC GAAATCGGGA GTTGATTTTG CGATGATCCA AGGCGGAGTT
GCGAATATCA GCGAATACCC AAATTTGGTT TCGATTGCAG GCATGTTTTA CGAGCCAATT
TGGGTTTGGT ATCGCGAAGG TGCTTTTAAA AATGATGGCG GTCAACTCAA AATATTGAGT
CAGCTAAAAG GAAAGCGTAT CTCAATTGGT AATGAGGGTA GCGGCACTCT GGCACTTTCC
AAGGACTTAT TGCAAGCCAG CGGAATCACT GAAAATGAAT TGGGTGCTCA AAAATTAAAG
CCCGATGAAG CCATTGCTAA GTTAAGCAAT GGCGAGTTGG ATGCGGCATT TATTGTGGCA
GCTGCAGAGG CGCCCGTTCT GAGAAAGTTT TACTCGATAC CAGGCATTCG TTTGATGAAT
TTTGATCAGG CTGATGCTTA CACTCGCAAT CTTCCGTATC TATCGAAGGT AACGGCACCA
AGAGGATTGT TGAGTATTCA GTACGATCAA CCCCGCCAGG ATATTCAGGT GATGGCCGCT
ACGGCAACAT TGGTAGCGCA TGACAATGTG AGCCCGGCAT TGGTCTCGCT TTTGCTTGGT
GCGTCTTACG ATATTTTGAA ATCGTATTCA CGCTTGCAAA AAGCGGGTGA GTTTCCGTCA
AGTACGGGAT TAGATTTTCC TTTGCATGTA GATGCAGAGA TCTATTTAAA AGATGGACCT
TCATTCTTGC ATCGACATTT ACCATTCTGG ACCGCAGTTT GGGCAGGTCG TTTTGTCAAG
ATTGTGATCC CATTACTAGT GATTTTGATC CCATTGTTTA CTTACATATC AACAACAAAA
AATTTCTTAT TGCGTTTGAA GTTAGCTCAG GTCTATGAGG AACTCAAGGT GATTAAAAAA
AATGCACAAA ACCCTGCGCT GAAAGAAAAA AACTTTAAGG ATCTTGAGGC TATCGAAAAG
CGTGTCGGCA ATATCAAGGT ATCGATGTTA GATGCAAAAG AGCTATATGA TCTTAAAGGG
CATGTGGGTG AAGTGCGCGG GCGCTTAAAT CTAGTTCATT GA
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| Protein sequence | MNFFKRQIYN PLALAASFFV LLVVLFGVLW ILVPPPPKSI EMATGFPTGL YYQFGERLKT
ELSQDGVNLK ARSTGGTIDD LGLLNDPKSG VDFAMIQGGV ANISEYPNLV SIAGMFYEPI
WVWYREGAFK NDGGQLKILS QLKGKRISIG NEGSGTLALS KDLLQASGIT ENELGAQKLK
PDEAIAKLSN GELDAAFIVA AAEAPVLRKF YSIPGIRLMN FDQADAYTRN LPYLSKVTAP
RGLLSIQYDQ PRQDIQVMAA TATLVAHDNV SPALVSLLLG ASYDILKSYS RLQKAGEFPS
STGLDFPLHV DAEIYLKDGP SFLHRHLPFW TAVWAGRFVK IVIPLLVILI PLFTYISTTK
NFLLRLKLAQ VYEELKVIKK NAQNPALKEK NFKDLEAIEK RVGNIKVSML DAKELYDLKG
HVGEVRGRLN LVH
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