| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_1353 |
|---|
| Symbol | |
|---|
| ID | 6183230 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010531 |
|---|
| Strand | + |
|---|
| Start bp | 1167096 |
|---|
| End bp | 1167497 |
|---|
| Gene Length | 402 bp |
|---|
| Protein Length | 133 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 641671905 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001798078 |
|---|
| Protein GI | 171463965 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4852] Predicted membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 52 |
|---|
| Fosmid unclonability p-value | 0.0247445 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGCTCAAGA ATTTTGCCAT CTACCTCTCG TTTTTAGTCG CTTTAGTTGC GATCGATTTG
GTGTGGCTCT TGGGTATTGC AAAAAATCTC TATCGCGACC AGATGGGCGA CTTGATGGCT
AGCGAGCCTA AGCTCATAGC CGGGTTAGCT TTCTACCTTC TCTATGCGCT TGGAGTCTGT
ATTTTTGTCA TCGTTCCAGC ACTCTCAAAA CAGTCTTTGA TATATGCACT GCAATATGGC
GCCCTCTTTG GTCTGTTCTG CTACATGACA TACGACCTCA CTAACCTTGC GGTAATTAGA
AACTTTCCAA TCCAACTAGC GCTGATTGAT ATTGCATGGG GCAGTTTTGT AACAGCATTA
TGTGCGGGCC TAACCTACTG GGTTGGCAAC CATATTTCAT AG
|
|---|
| Protein sequence | MLKNFAIYLS FLVALVAIDL VWLLGIAKNL YRDQMGDLMA SEPKLIAGLA FYLLYALGVC
IFVIVPALSK QSLIYALQYG ALFGLFCYMT YDLTNLAVIR NFPIQLALID IAWGSFVTAL
CAGLTYWVGN HIS
|
|---|
| |