| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_1346 |
|---|
| Symbol | |
|---|
| ID | 6182889 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010531 |
|---|
| Strand | + |
|---|
| Start bp | 1159908 |
|---|
| End bp | 1160858 |
|---|
| Gene Length | 951 bp |
|---|
| Protein Length | 316 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 641671901 |
|---|
| Product | TRAP transporter solute receptor, TAXI family |
|---|
| Protein accession | YP_001798074 |
|---|
| Protein GI | 171463961 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2358] TRAP-type uncharacterized transport system, periplasmic component |
|---|
| TIGRFAM ID | [TIGR02122] TRAP transporter solute receptor, TAXI family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.331988 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 0.00000684502 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAACTAT TTAAAGTCAT TGCTTTATCG CTGAGCTTTC TTTGCGCAAC CGCGAATGCT
CAAAATATCT CAATTGCGAC TGGTGGCACA GGGGGCGTTT ACTACCCAAT GGGTGGTGGC
CTTGCATCTG TGCTCTCCAG CAAAGTTCCC GGAATGTCTG CCACTGCAGA AGTGACCGGC
GGTTCAGTAG ACAATCTGAA GCTGATTGGC ACAGGCAAGC CGTATGTTGG CTTCTCAATG
ACCGATGCTG CTAAAGATGC GACCAGTGGT GCTGATAAAT TTAAAGATAA GCCGATTGAA
GTGCGCACCT TGCTAATTCT TTATCCAAAC CTGATGCACG TGGCAACAAT GGAATCCACC
GGTATTAAGA CAATGGCCGA TCTAAAAGGC AAGCGAGTCA GTACCGGATC CCCAGGTAGC
GCAACAGAAG TCCTGGCGTT TCGTCTTCTT GAAGCAGCGG GTATCGACCC AACCAAGGAT
ATCAAGCGCG AACGTTTGAG CGTTGCAGAA TCTGTAAATG CTGTAAAGGA TCGCAAAATT
GATGCATTCT TTTGGGTTGG CGGCTTACCT ACTGCAGCAG TAACCGATTT AGCCAATAGC
CCTGACATGA AAATTGTGAT GATTGATACT GCAGCTGAAG TGCCATCAAT GAATAAAAAA
TATGGCAACT TGTATTTCCC ATCACTCATT ACCAAGCAAA CTTATAGCGG CATGACAAAA
GACAATAATG TTGCCGCAGT TGCCAACCTA TTGGTAGTCA ATGCATCCAT GTCCGATGCT
GAAGCCTACA AAATTGTAAA GGCAGTCTTT GATAACCAGC TCGAATTAGT GCGTTCGCAT
GCTGAATATC GAAATGTGAA GCTGGATACC CAAAAGGCAA ACGCAACATC AGTTCCTTAC
TATCCAGGCG CCTTAAAGTA CTTCAAGGAA AAGGGCGTCA AAGTAAACTA A
|
|---|
| Protein sequence | MKLFKVIALS LSFLCATANA QNISIATGGT GGVYYPMGGG LASVLSSKVP GMSATAEVTG
GSVDNLKLIG TGKPYVGFSM TDAAKDATSG ADKFKDKPIE VRTLLILYPN LMHVATMEST
GIKTMADLKG KRVSTGSPGS ATEVLAFRLL EAAGIDPTKD IKRERLSVAE SVNAVKDRKI
DAFFWVGGLP TAAVTDLANS PDMKIVMIDT AAEVPSMNKK YGNLYFPSLI TKQTYSGMTK
DNNVAAVANL LVVNASMSDA EAYKIVKAVF DNQLELVRSH AEYRNVKLDT QKANATSVPY
YPGALKYFKE KGVKVN
|
|---|
| |