Gene Pnec_1342 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnec_1342 
Symbol 
ID6183785 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. necessarius STIR1 
KingdomBacteria 
Replicon accessionNC_010531 
Strand+ 
Start bp1156798 
End bp1158003 
Gene Length1206 bp 
Protein Length401 aa 
Translation table11 
GC content48% 
IMG OID641671899 
Productmajor facilitator superfamily MFS_1 
Protein accessionYP_001798072 
Protein GI171463959 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value0.0000002456 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAATCCCG GCAAAGCCTT TAGAACTTTA CTGTTGTACC GCATTGGTGC AACGCTAAGC 
TATCAAATTA CGATGGTGGC GGTAGGCTGG CATCTATACG AAATCACCAA TAGCGTGGTT 
TCCCTCGGAC TCATCGGCCT TGCAGAGCTT GTGCCCTACT TTGCACTAGC GCTGTATTCG 
GGGCATGCGG TTGATCACTA CTCACGCAAA TGGATTGCGG CCATTGCCTG CTTCATTCAT 
ATTGCAGTAG GCTTATTTTT GACAGGTATT GCATTGGGCT GGCTTTCTCC GCCAGTGCCG 
CTAATCTACA CCGCAGTTGC TTTCATCGGC ATTGGGCGAG CACTATTAAG ACCATCTTAT 
CAAGCGCTGT TTGGACAGAT CATTCCAAGA GATCAGTTGC CGCGTTACAC CGCATATGCA 
TCTTCTGCCT TTCAGATATG TGTAGTTGCT GGCCCAGGAC TGGGCGGACT CATGATTGGT 
TTTGCTGGGC TTGAATGGAC TTATCTGCTT GCCACATTAT TTGGGGCCAT CGGTTTATAT 
GGCATCACCT TTATCACCGC GGCAGAAGAA AAAACCAGCA ATTTATCGGA CCACTTCTTA 
AAGAGTTTTT TAGAAGGTTT TCATTACGTC AGAAAACACG AACTCATCTT GAGCATCATG 
GCACTAGATA TGTTTGCCGT TCTCCTTGGG GGCGCCGTTT CCATTCTACC GGCCTTTGTG 
AAAGAAGTAC TCAATGCGGG ACCAGAAACG CTCGGGATTT TGCGCGCCGC GCCCGCCGCT 
GGAGCAGTGA TTACCGGCAT TTACTTGGCC AGACGCCCGA TTCTGACTGA CTCAGGAAAA 
CACCTTTTAA TCTCGGTTGC AGGCTTTGGT GCAGCAATTA TTGCCTTTGG CATCTCCAGC 
AACTTATGGC TATGCGCCCT CTTCTTGTTT ATTTCTGGTT GCTTTGACTC GGTGTCTGTG 
GTGATCCGGG GAAGCATCAT GCAACTTACT ACGCCGGACC ATATGCGCGG CAGAATTAGC 
GCCATTAATG GCATCTTTAT TGGCTCATCC AACGAATTAG GTGCACTTGA ATCTGGTCTT 
GCTGCCAGTA TGATGGGCTT GGTGCCGTCT ATCGTCTTTG GTGGGATGGC AACGATCGCA 
ATTGTTTTAA TTACGTATCG ACTTGCCCCA CACTTGAGCA AACTGCATTT AAAAGATATC 
TCTTAA
 
Protein sequence
MNPGKAFRTL LLYRIGATLS YQITMVAVGW HLYEITNSVV SLGLIGLAEL VPYFALALYS 
GHAVDHYSRK WIAAIACFIH IAVGLFLTGI ALGWLSPPVP LIYTAVAFIG IGRALLRPSY 
QALFGQIIPR DQLPRYTAYA SSAFQICVVA GPGLGGLMIG FAGLEWTYLL ATLFGAIGLY 
GITFITAAEE KTSNLSDHFL KSFLEGFHYV RKHELILSIM ALDMFAVLLG GAVSILPAFV 
KEVLNAGPET LGILRAAPAA GAVITGIYLA RRPILTDSGK HLLISVAGFG AAIIAFGISS 
NLWLCALFLF ISGCFDSVSV VIRGSIMQLT TPDHMRGRIS AINGIFIGSS NELGALESGL 
AASMMGLVPS IVFGGMATIA IVLITYRLAP HLSKLHLKDI S