Gene Pnec_1340 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnec_1340 
Symbol 
ID6183589 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. necessarius STIR1 
KingdomBacteria 
Replicon accessionNC_010531 
Strand
Start bp1155616 
End bp1156068 
Gene Length453 bp 
Protein Length150 aa 
Translation table11 
GC content44% 
IMG OID641671897 
Productcytochrome c prime 
Protein accessionYP_001798070 
Protein GI171463957 
COG category[C] Energy production and conversion 
COG ID[COG3909] Cytochrome c556 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value0.0000000194758 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAAACCAC AAAAATTGGT TTTAGCAAGT ACCGCAACTG TTTTAACACT AGGCGCAGGT 
GTAACTTTTG CACAATTTCA AAAACCAGAA GATGCCATTA AATATCGTCA AAGCGCATTT
ACAGTAATGG CAAATTCTTT TGGCAAAATT GGTGCAGTTG TGAAAGGCGA AGCGCCTTAC
AACAAAGATG AAGTTGCCAA GAATGCTGCG ATCGTTGCAA TGATGTCCGC ACTGCCATGG
CAAGCATTTG ACCCTGGCAC TGAAGATGGT AAAGCCAAAT CTGATGTTTG GTCGGACAGC
GCTAAGTTCA AATCTGCCTC AGAAAAAATG CAGCTGGCTG TAGCCAATCT CAATACCGCA
GCCCAATCCG GTGATTTGGA GAGCATTAAG AAAACTTTTG GGGCTGCCGG CGCAACCTGC
AAGGGCTGCC ATGATGATTT TAAAAAGAAG TGA
 
Protein sequence
MKPQKLVLAS TATVLTLGAG VTFAQFQKPE DAIKYRQSAF TVMANSFGKI GAVVKGEAPY 
NKDEVAKNAA IVAMMSALPW QAFDPGTEDG KAKSDVWSDS AKFKSASEKM QLAVANLNTA
AQSGDLESIK KTFGAAGATC KGCHDDFKKK